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SMART on FHIR EMR app for retrieving Human Phenotype Ontology terms directly from medical record notes

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Pheno-Plus

Pheno-Plus is a SMART on FHIR application designed to streamline phenotype extraction from electronic health records (EHR). It enables users to select relevant clinical notes, extract phenotype terms using ClinPhen, review terms in context, and curate a final phenotype list in multiple formats.

Data shown is only demo data. Screenshot 2025-02-10 at 10 48 34 AM

🚀 Features

  • EHR Integration: Embeds directly within the clinical chart using SMART on FHIR.
  • Flexible Note Selection: Users can choose which clinical notes to analyze.
  • Automated Phenotype Extraction: Utilizes ClinPhen NLP to extract relevant phenotype terms.
  • Contextual Review: Displays terms within the text for user validation.
  • Interactive Curation: Users can unselect non-relevant terms before finalizing.
  • Easy Data Export: Copy the final phenotype list in multiple formats.

🏥 How It Works

  1. Select Notes: Choose relevant clinical notes within the EHR.
Screenshot 2025-02-10 at 10 50 19 AM
  1. Extract Phenotypes: The app parses the notes using ClinPhen to identify phenotype terms.

  1. Review & Filter: Users see extracted terms in their original context and can remove irrelevant ones.
Screenshot 2025-02-10 at 10 58 18 AM
  1. Copy & Export: The finalized list of phenotype terms can be copied in different formats for further use.
Screenshot 2025-02-10 at 10 50 44 AM

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SMART on FHIR EMR app for retrieving Human Phenotype Ontology terms directly from medical record notes

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