ML-Results-Analysis-Notebooks

This repository showcase code for visualization and analysis to reproduce the presented results in the paper for semi-supervised rescoring in ANN-SoLo

Repository structure

To re-run the whole notebook analysis: Clone the repository, unzip all the files in the data/. folder then run the notebook's cells.

Publication

If you use snippets of code from this notebook in your work, please cite the following publication:

• Issar Arab, William E. Fondrie, Kris Laukens, and Wout Bittremieux. Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching. Journal of Proteome Research (2023). doi:10.1021/acs.jproteome.2c00616

Q-value plot