Code

Meta-Analysis 2.0#248

Code

Merged

FBartos merged 127 commits intojasp-stats:masterjasp-stats/jaspMetaAnalysis:masterfrom FBartos:meta-rewriteFBartos/jaspMetaAnalysis:meta-rewriteCopy head branch name to clipboardNov 6, 2024

+11,496-2,580

Commits

Commits on Nov 6, 2024

• effect sizes draft

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• Update ClassicalMetaAnalysis.qml

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• update effect size calculation qml

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• Update EffectSizeComputation.qml

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• update

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• Update effectsizecomputation.R

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• Bruno's fixes

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• basic model fit

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• coefficient estimates

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• terms tests

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• updates

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• Update EffectSizeComputation.qml

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• updates

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• updates

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• updates

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• updates

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• restrict methods

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• finish fitting function

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• Update ClassicalMetaAnalysis.qml

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• marginal means

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• Update classicalmetaanalysiscommon.R

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• hotfix effect size calculation

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• add adjusted estimates

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• forest plot

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• update forest plot

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• forest plot progress

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• forest

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• update

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• update forest plot

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• effect size computation

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• add bubble plot

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• finish bubble plot

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• add metafor R code display

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• forest plot fixes

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• add VIF

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• fix sizing

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• fixes

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• add diagnostics

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• Update classicalmetaanalysiscommon.R

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• add profile likelihood plot

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• baujat plot

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• fix forest plot

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• fix baujat updating

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• compartmentalize classical meta-analysis

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• add multivariate

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• random effect structure extraction

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• some updates

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• Update ClassicalMetaAnalysisStatistics.qml

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• updates

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• fix tables

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• updates

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• fix NAs

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• Update classicalmetaanalysiscommon.R

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• update

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• Update classicalmetaanalysiscommon.R

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• finish bubble plot

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• add residual funnel plot

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• Update classicalmetaanalysiscommon.R

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• Update classicalmetaanalysiscommon.R

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• add randomization test

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• Update classicalmetaanalysiscommon.R

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• funnel plot updates

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• add funnel assymetry tests

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• remove debugging info

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• clean up

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• fixes & cleanup

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• Update funnnelplot.R

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• fixes

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• remove outdated files

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• fix funnel plot: simultaneous mapping does not work

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• fix funnel plot: error handling

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• fix funnel plot: error handling 2

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• fix funnel plot:: missing data handling

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• fix funnel plot:: missing data handling

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• fix effect size computation: add type (data loading still broken)

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• fix meta-analysis: omnibus test names

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• fix meta-analysis: forest plot xlab changes with transformation

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• fix funnel.R file name

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• fix effect size computation: Step labels

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• fix effect size computation: remove flattening, subset & data read (variable renaming still broken)

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• fix funnel plot: asymmetry typo

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• fix funnel plot: fitContainer -> fitState

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• fix funnel plot: add spaces

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• fix funnel plot: add column type

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• fix funnel plot: error handling

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• meta-analysis fix: method option names transformation

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• fix effect size computation: remove old code

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• fix meta-analysis: permutation test code

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• fix effect size computation: fix subsetting

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• fix meta-analysis: permutation dispatching code

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• fix meta-analysis: forest plot variable types bugs & clustered heterogeneity

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• fix meta-analysis: data loading & checking

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• fix meta-analysis: handling diagnostics for clustered/location-scale models

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• ooops: remove saveRDS

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• fix multivariate meta-analysis: diagnostics and options parsing

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• fix multivariate meta-analysis: random effects display & heterogeneity summary

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• fix multivariate meta-analysis: prediction intervals in estimated marginal means

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• fix multivariate meta-analysis: forest plot CI/PI issues

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• fix multivariate meta-analysis: diagnostics table

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• fix multivariate meta-analysis: Baujat not available for rma.mv

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• fix multivariate meta-analysis: profile likelihood plot

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• fix meta-analysis: weights and GENQ estimators

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• fix meta-analysis: omnibus moderation test specification

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• fix multivariate meta-analysis: fix spatial random effects & known correlational structures

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• add testing data sets

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• fix multivariate meta-analysis: add inclusion test for random effects

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• hide confidence intervals for random effects option

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• fix multivariate meta-analysis: optimizer settings

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• add metafor code injection

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• Apply suggestions from code review

  Show description for 26666a1
  

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• typos

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• fixing .maExtendMetaforCallFromOptions

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• make nicer error messages

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• fixing forest plot with heterogeneity test

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• fixing pooled effect size estimates (under no moderation but heteroskedasticity)

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• fix empty weights

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• fix funnel plot: allow offsetting x-axis label position + larger default

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• fix effect size computation: no errors on no input

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• fix effect size computation: better handling of observed effects

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• fix effect size computation: cronbachsAlpha -> coefficientAlpha

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• fix effect size computation: fixing incorrect variance type

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• fix meta-analysis: prevent issues with dropping the intercept

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• Update effectsizecomputation.R

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• computedcolumnsNamesEffectSize -> computedColumnsNamesEffectSize

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• add documentation (part 1/2)

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• add documentation (2/2)

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• update not possible

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