Fix cI? #21
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| # This file is autogenerated by maturin v1.8.1 | |
| # To update, run | |
| # | |
| # maturin generate-ci github | |
| # | |
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| tags: | |
| - '*' | |
| pull_request: | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| permissions: | |
| contents: read | |
| jobs: | |
| linux: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| matrix: | |
| platform: | |
| - runner: ubuntu-24.04 | |
| target: x86_64 | |
| - runner: ubuntu-24.04 | |
| target: x86 | |
| - runner: ubuntu-24.04 | |
| target: aarch64 | |
| steps: | |
| - run: sudo apt-get update && sudo apt-get install -y build-essential | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - run: cd minimappers2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| # Conditionally install AArch64 cross-compiler and libraries | |
| - name: Install AArch64 Cross-Compiler and Libraries | |
| if: matrix.platform.target == 'aarch64' | |
| run: | | |
| sudo dpkg --add-architecture arm64 | |
| sudo apt-get update | |
| sudo apt-get install -y gcc-aarch64-linux-gnu libc6-dev-arm64-cross | |
| # Add the AArch64 Rust target | |
| - name: Add AArch64 Rust Target | |
| if: matrix.platform.target == 'aarch64' | |
| run: rustup target add aarch64-unknown-linux-gnu | |
| # Set environment variables for cross-compilation | |
| - name: Set Environment Variables for AArch64 | |
| if: matrix.platform.target == 'aarch64' | |
| run: | | |
| echo "CARGO_TARGET_AARCH64_UNKNOWN_LINUX_GNU_LINKER=aarch64-linux-gnu-gcc" >> $GITHUB_ENV | |
| echo "CC_aarch64_unknown_linux_gnu=aarch64-linux-gnu-gcc" >> $GITHUB_ENV | |
| echo "CXX_aarch64_unknown_linux_gnu=aarch64-linux-gnu-g++" >> $GITHUB_ENV | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist | |
| sccache: 'true' | |
| manylinux: auto | |
| working-directory: "minimappers2" | |
| # - name: Build free-threaded wheels | |
| # uses: PyO3/maturin-action@v1 | |
| # with: | |
| # target: ${{ matrix.platform.target }} | |
| # args: --release --out dist -i python3.13t | |
| # sccache: 'true' | |
| # manylinux: auto | |
| # working-directory: "minimappers2" | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-linux-${{ matrix.platform.target }} | |
| path: dist | |
| musllinux: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| matrix: | |
| platform: | |
| - runner: ubuntu-24.04 | |
| target: x86_64 | |
| - runner: ubuntu-24.04 | |
| target: x86 | |
| - runner: ubuntu-24.04 | |
| target: aarch64 | |
| steps: | |
| - run: sudo apt-get update && sudo apt-get install -y build-essential musl-tools | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - run: cd minimappers2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist | |
| sccache: 'true' | |
| manylinux: musllinux_1_2 | |
| working-directory: "minimappers2" | |
| # - name: Build free-threaded wheels | |
| # uses: PyO3/maturin-action@v1 | |
| # with: | |
| # target: ${{ matrix.platform.target }} | |
| # args: --release --out dist -i python3.13t | |
| # sccache: 'true' | |
| # manylinux: musllinux_1_2 | |
| # working-directory: "minimappers2" | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-musllinux-${{ matrix.platform.target }} | |
| path: dist | |
| # No support for minimap2 for windows | |
| macos: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| matrix: | |
| platform: | |
| - runner: macos-13 | |
| target: x86_64 | |
| - runner: macos-14 | |
| target: aarch64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - run: cd minimappers2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist | |
| sccache: 'true' | |
| working-directory: "minimappers2" | |
| # - name: Build free-threaded wheels | |
| # uses: PyO3/maturin-action@v1 | |
| # with: | |
| # target: ${{ matrix.platform.target }} | |
| # args: --release --out dist -i python3.13t | |
| # sccache: 'true' | |
| # working-directory: "minimappers2" | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-macos-${{ matrix.platform.target }} | |
| path: dist | |
| sdist: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: sudo apt-get update && sudo apt-get install -y build-essential | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - run: cd minimappers2 | |
| - name: Build sdist | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| command: sdist | |
| working-directory: "minimappers2" | |
| args: --out dist | |
| - name: Upload sdist | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-sdist | |
| path: dist | |
| release: | |
| name: Release | |
| runs-on: ubuntu-latest | |
| if: ${{ startsWith(github.ref, 'refs/tags/py-') || github.event_name == 'workflow_dispatch' }} | |
| needs: [linux, musllinux, macos, sdist] | |
| permissions: | |
| # Use to sign the release artifacts | |
| id-token: write | |
| # Used to upload release artifacts | |
| contents: write | |
| # Used to generate artifact attestation | |
| attestations: write | |
| steps: | |
| - run: sudo apt-get update && sudo apt-get install -y build-essential | |
| - uses: actions/download-artifact@v4 | |
| - run: cd minimappers2 | |
| - name: Generate artifact attestation | |
| uses: actions/attest-build-provenance@v1 | |
| with: | |
| subject-path: 'wheels-*/*' | |
| - name: Publish to PyPI | |
| if: ${{ startsWith(github.ref, 'refs/tags/') }} | |
| uses: PyO3/maturin-action@v1 | |
| env: | |
| MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} | |
| with: | |
| working-directory: "minimappers2" | |
| command: upload | |
| args: --non-interactive --skip-existing wheels-*/* |