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My PhD thesis on "Population-Based Approaches to Characterize Copy Number Variation from Whole-Genome Sequencing in Healthy Individuals and Disease Cohorts"
make compiles the thesis.
The Makefile also contains other commands I used to check for errors, produce a version with more details (with comments), (attempt to) convert to epub, etc.
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My PhD thesis on "Population-Based Approaches to Characterize Copy Number Variation from Whole-Genome Sequencing in Healthy Individuals and Disease Cohorts"