Table captions.

base/core/src/main/java/org/openscience/cdk/graph/AllCycles.java

@@ -93,7 +93,8 @@ public final class AllCycles {
      * (Dec '12) which would successfully complete for a given degree are listed
      * below.
      *
-     * <table> <tr><th>Percent</th><th>Max Degree</th></tr>
+     * <table><caption>Table 1. Num of structures processable in PubChem Compound (Dec 2012) as a result of
+     * setting the max degree</caption><tr><th>Percent</th><th>Max Degree</th></tr>
      * <tr><td>99%</td><td>9</td></tr> <tr><td>99.95%</td><td>72</td></tr>
      * <tr><td>99.96%</td><td>84</td></tr> <tr><td>99.97%</td><td>126</td></tr>
      * <tr><td>99.98%</td><td>216</td></tr> <tr><td>99.99%</td><td>684</td></tr>

base/standard/src/main/java/org/openscience/cdk/ringsearch/AllRingsFinder.java

@@ -308,7 +308,8 @@ private IRing toRing(IAtomContainer container, EdgeToBondMap edges, int[] cycle,
      * The latest results were calculated on PubChem Compound (Dec' 12) and
      * summarised below.
      *
-     * <table style="width: 100%;"> <tr><th>Maximum Degree</th><th>Percent
+     * <table style="width: 100%;"><caption>Table 1. Num of structures processable in PubChem Compound (Dec 2012) as a result of
+     * setting the max degree</caption><tr><th>Maximum Degree</th><th>Percent
      * (%)</th><th>Completed<br> (ring systems)</th><th>Uncompleted<br>
      * (ring systems)</th></tr> <tr><td>&nbsp;</td></tr>
      * <tr><td>72</td><td>99.95</td><td>17834013</td><td>8835</td></tr>

descriptor/fingerprint/src/main/java/org/openscience/cdk/fingerprint/SubstructureFingerprinter.java

@@ -38,6 +38,7 @@
  *
 
  * <table>
+ * <caption>Table: 1: Default substructure patterns (SMARTS) for each bit position</caption>
  * <thead>
  * <tr>
  * <td>Bit position</td><td>Description</td><td>Pattern</td>

tool/formula/src/main/java/org/openscience/cdk/formula/rules/ChargeRule.java

@@ -30,8 +30,8 @@
  * a specific value. As default it is defined as neutral == 0.0.
  *
  *
- * <p>This rule uses these parameters:
  * <table border="1">
+ *   <caption>Table 1: Parameters set by this rule.</caption>
  *   <tr>
  *     <td>Name</td>
  *     <td>Default</td>

tool/formula/src/main/java/org/openscience/cdk/formula/rules/ElementRule.java

@@ -37,8 +37,8 @@
  * a occurrence of zero to 100.
  *
  *
- * <p>This rule uses these parameters:
  * <table border="1">
+ *   <caption>Table 1: Parameters set by this rule.</caption>
  *   <tr>
  *     <td>Name</td>
  *     <td>Default</td>

tool/formula/src/main/java/org/openscience/cdk/formula/rules/IsotopePatternRule.java

@@ -36,8 +36,8 @@
  *  correspond with other to compare.
  *
  *
- * <p>This rule uses these parameters:
  * <table border="1">
+ *   <caption>Table 1: Parameters set by this rule.</caption>
  *   <tr>
  *     <td>Name</td>
  *     <td>Default</td>

tool/formula/src/main/java/org/openscience/cdk/formula/rules/MMElementRule.java

@@ -37,8 +37,8 @@
  * The rules is based from Tobias Kind paper with the title "Seven Golden Rules for heuristic
  * filtering of molecular formula" {@cdk.cite kind2007}.
  *
- * <p>This rule uses these parameters:
  * <table border="1">
+ *   <caption>Table 1: Parameters set by this rule.</caption>
  *   <tr>
  *     <td>Name</td>
  *     <td>Default</td>

tool/formula/src/main/java/org/openscience/cdk/formula/rules/NitrogenRule.java

@@ -32,8 +32,8 @@
  * <p>If a compound has no nitrogen atom or an even number of nitrogen atoms, then the m/e value of [M]+ will be even.</p>
  *
  *
- * <p>This rule uses these parameters:
  * <table border="1">
+ *   <caption>Table 1: Parameters set by this rule.</caption>
  *   <tr>
  *     <td>Name</td>
  *     <td>Default</td>

tool/formula/src/main/java/org/openscience/cdk/formula/rules/RDBERule.java

@@ -43,8 +43,9 @@
  *  <p>The equation used is: D = 1 + [0.5 SUM_i(N_i(V_I-2))]</p>
  *  <p>where D is the unsaturation, i is the total number of different elements in the composition, N_i the number
  *  of atoms of element i, and Vi is the common valence of the atom i.</p>
- * <p>This rule uses these parameters:
+ *
  * <table border="1">
+ *   <caption>Table 1: Parameters set by this rule.</caption>
  *   <tr>
  *     <td>Name</td>
  *     <td>Default</td>

tool/formula/src/main/java/org/openscience/cdk/formula/rules/ToleranceRangeRule.java

@@ -31,9 +31,8 @@
  * between the tolerance range give a experimental mass. As default
  * the mass to range is 0.0.
  *
- *
- * <p>This rule uses these parameters:
  * <table border="1">
+ *   <caption>Table 1: Parameters set by this rule.</caption>
  *   <tr>
  *     <td>Name</td>
  *     <td>Default</td>