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Issue/16 - renamed configuration file #6

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Issue/16 - renamed configuration file #6

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b23a31f
Reorganizing code
jccaicedo Dec 13, 2017
bb53b6a
Updating directories
jccaicedo Dec 13, 2017
16508e1
Cleaning phase 2
jccaicedo Dec 14, 2017
a95ab6e
Fixed training notebook and added draft of evaluation
jccaicedo Dec 14, 2017
1108a44
test submit
Dec 14, 2017
2953216
create random file list for training, test, validation
timbecker83 Dec 14, 2017
a6703e0
Renamed helper to utils
Dec 14, 2017
4cfd284
added cetres data
timbecker83 Dec 14, 2017
8026331
Fixed precision and recall computation
Dec 14, 2017
b00e373
removed output
timbecker83 Dec 14, 2017
eaa6231
Merge pull request #1 from cells2numbers/cetres
Dec 14, 2017
0dd8cea
Integrated data partitions code by Tim
jccaicedo Dec 14, 2017
5178fe4
added import to split, fixed bug (image size) in data_provider
timbecker83 Dec 14, 2017
8d85d6e
Merge pull request #3 from cells2numbers/master
Dec 14, 2017
be996ac
Updated notebooks and scripts for full cycle experimentation
jccaicedo Jan 17, 2018
82bd440
Improved elastic deformation notebook
jccaicedo Jan 19, 2018
df1783d
Implemented augmentation based on piecewiese affine transformations
timbecker83 Jan 22, 2018
df390bd
cleaned notebook output
cells2numbers Jan 22, 2018
c7ae886
Merge pull request #9 from jccaicedo/issues/6
cells2numbers Jan 23, 2018
f991703
update
cells2numbers Jan 23, 2018
ac73a4c
Merge branch 'master' of github.com:jccaicedo/unet4nuclei
cells2numbers Jan 23, 2018
a2e87de
removed unused code
cells2numbers Jan 23, 2018
6044bad
removed unused code
cells2numbers Jan 23, 2018
65e0e31
Updated visualizations
jccaicedo Jan 28, 2018
3b8faea
Merge branch 'master' of github.com:jccaicedo/unet4nuclei
jccaicedo Jan 28, 2018
dc0c898
Load files on the fly. Fixes #7
jccaicedo Jan 29, 2018
09b4582
Updated data processing and added weighted loss
jccaicedo Jan 30, 2018
c68e290
Renamed notebooks, extended evaluation
jccaicedo Feb 3, 2018
fedc0b1
Parameterized notebook 01
jccaicedo Feb 8, 2018
f054726
Manual merge of branch 8
jccaicedo Feb 8, 2018
73af73e
Yes!
jccaicedo Feb 8, 2018
922dcf1
Major refactoring!
jccaicedo Feb 9, 2018
1105fa7
Factorization done. Fixes #11
jccaicedo Feb 12, 2018
eaf5922
Merge pull request #14 from jccaicedo/issue/11
Feb 12, 2018
52e0f5c
removed unused flags
cells2numbers Feb 12, 2018
fbb41ef
Change the precision metric to F1
jccaicedo Apr 13, 2018
f91e3f8
add automatic dataset downloading
santient Jul 9, 2018
ad5221d
Merge pull request #15 from santient/master
Jul 11, 2018
980437a
Updated scripts to use F1 metric
jccaicedo Jul 11, 2018
ae66f24
Merge branch 'master' of github.com:jccaicedo/unet4nuclei
jccaicedo Jul 11, 2018
f2d6a67
All code up to date
jccaicedo Jul 11, 2018
976e051
renamed bbbc039_seg_config.py
cells2numbers Jul 25, 2018
e7d9739
renamed file
cells2numbers Jul 25, 2018
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test submit
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Ubuntu committed Dec 14, 2017
commit 1108a44ea5d9be8e1b4e5c7e97ac0d516d960358
2 changes: 2 additions & 0 deletions README.md
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# U-net for segmentation of nuclei in fluorescence microscopy