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@jyyulab

Yu Laboratory @ St. Jude

Yu Lab in the Department of Computational Biology at St. Jude Children's Research Hospital

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  1. NetBID NetBID Public

    Data-driven Network-based Bayesian Inference of Drivers

    R 40 9

  2. SJARACNe SJARACNe Public

    Scalable Tool for Gene Network Reverse Engineering

    C++ 22 16

  3. NetBID_shiny NetBID_shiny Public

    NetBID shiny app

    R 2

  4. scMINER scMINER Public

    Single-cell Mutual Information-based Network Engineering Ranger

    R 9 3

Repositories

Showing 10 of 19 repositories
  • NetBID Public

    Data-driven Network-based Bayesian Inference of Drivers

    jyyulab/NetBID’s past year of commit activity
    R 40 Apache-2.0 9 8 1 Updated Dec 21, 2024
  • MICA Public

    Mutual Information-based Non-linear Clustering Analysis

    jyyulab/MICA’s past year of commit activity
    Python 1 Apache-2.0 3 2 1 Updated Dec 10, 2024
  • scMINER Public

    Single-cell Mutual Information-based Network Engineering Ranger

    jyyulab/scMINER’s past year of commit activity
    R 9 Apache-2.0 3 2 0 Updated Nov 13, 2024
  • scMINER_analysis Public

    Codes used for benchmarking scMINER in cell clustering, network inference and hidden driver identification

    jyyulab/scMINER_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 18, 2024
  • scMINER_documentation Public

    This a the full documentation of scMINER R package.

    jyyulab/scMINER_documentation’s past year of commit activity
    TeX 0 0 0 0 Updated Oct 5, 2024
  • redeconv Public
    jyyulab/redeconv’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Aug 31, 2024
  • ScreenBEAM2 Public

    Gene-level meta-analysis of high-throughput functional genomics (RNAi or CRISPR) screens.

    jyyulab/ScreenBEAM2’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Jul 25, 2024
  • MICA-archive2 Public archive Forked from jyyulab/MICA

    Mutual Information-based Non-linear Clustering Analysis

    jyyulab/MICA-archive2’s past year of commit activity
    Python 0 Apache-2.0 3 0 0 Updated May 30, 2024
  • MICA-archive Public archive Forked from jyyulab/MICA

    Mutual Information-based Non-linear Clustering Analysis

    jyyulab/MICA-archive’s past year of commit activity
    Python 0 Apache-2.0 3 0 0 Updated May 30, 2024
  • SJARACNe Public

    Scalable Tool for Gene Network Reverse Engineering

    jyyulab/SJARACNe’s past year of commit activity
    C++ 22 16 10 0 Updated May 28, 2024
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