DESCRIPTION

Package: ScreenBEAM2
Type: Package
Title: A novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling, Version 2
Version: 0.1.0
Author@R: person('Xinge', 'Wang', email = 'wang.xinge@outlook.com')
Author: Xinge Wang,
  Chenxi Qian
Maintainer@R: person('Chenxi', 'Qian', email = 'tracytsien@hotmail.com')
Maintainer: Chenxi Qian<tracytsien@hotmail.com>
Description: ScreenBEAM2 is the upgraded version of ScreenBEAM1. It can perform functional genomics screening from FASTQ file. It is a trim-free, allowing number of mismatch, BLAT-depend pipeline. Downstream analysis uses Bayesian hierarchical modeling, removed bias caused by the unbalanced number of sh/sgRNA targeting the same gene.
License: Apache License
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
Depends: 
    R (>= 3.6.0),
    Biobase (>= 2.38.0),
    readr (>= 1.3.1),
    kableExtra (>= 1.1.0),
    knitr (>= 1.24),
    data.table (>= 1.12.2),
    graphics,
    grDevices,
    plyr (>= 1.8.4)
Imports:
    MCMCglmm (>= 2.29),
    RColorBrewer (>= 1.1-2),
    stats (>= 3.6.0),
    stringr (>= 1.4.0), 
    tidyr,
    dplyr (>= 0.8.0),
    methods,
    lme4,
    rmarkdown (>= 2.1),
    arm (>= 1.10.1)
Suggests:
    NetBID2