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Potential references
Links to references which may be useful for my thesis and subsequent work.
Planetary Boundaries: Exploring the Safe Operating Space for Humanity paper DOI: 10.5751/ES-03180-140232 One of my favorite papers about the thresholds of boundaries for sustainable existence on earth.
The FAIR Guiding Principles for scientific data management and stewardship doi:10.1038/sdata.2016.18
Open-source Project for a Network Data Access Protocol link from Pier
Making Marine Life Count: A New Baseline for Policy DOI: 10.1371/journal.pbio.1000531 From Pier about Ocean policy. read it not too substantial maybe just a bit of intro.
DOOS Consultative Draft no DOI for insight into functions that can be understood as ecosystem services of the deep, and thus linked to natural capital.
UN publication: TRANSFORMING OUR WORLD: THE 2030 AGENDA FOR SUSTAINABLE DEVELOPMENT no DOI reference for the sustainable development goals and targets.
Microorganisms and ocean global change DOI: 10.1038/nmicrobiol.2017.58 From Pier, a good article to mine for some ontology content linked to global change.
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration doi:10.1038/nbt1346
The environment ontology: contextualising biological and biomedical entities doi:10.1186/2041-1480-4-43
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation DOI 10.1186/s13326-016-0097-6
Gene Ontology: tool for the unification of biology doi:10.1038/75556
A communal catalogue reveals Earth’s multiscale microbial diversity doi:10.1038/nature24621 Uses EMPO a light-weight application ontology built on ENVO the Earth Microbiome Project Ontology
HAUSGARTEN: Multidisciplinary investigations at a deep-sea, long-term observatory in the Arctic Ocean DOI: 10.5670/oceanog.2005.24 HAUSGARTEN introduction.
FRAM-FRontiers in Arctic marine Monitoring Visions for permanent observations in a gateway to the Arctic Ocean DOI: 10.1109/OCEANS-Bergen.2013.6608008
##cryoMIxS Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications doi:10.1038/nbt.1823
litterbase reference publication DOI: 10.1016/B978-0-12-812271-6.00104-6 Publication to go with AWI litter base data, if I work on ontologizing marine litter.
Citizen scientists reveal: Marine litter pollutes Arctic beaches and affects wild life DOI: 10.1016/j.marpolbul.2017.09.055 paper associated with marine litter data set.
Natural variability or anthropogenically-induced variation? DOI: 10.1016/j.ecolind.2015.10.001 AWI publication looking at interdisciplinary data, could work well with the awi dataset linking endevor.
Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic) DOI:10.1371/journal.pone.0072779 paper for the FRAM Bacterial sequence information by Marianne Jacob from our group.
Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait). doi:10.3389/fmicb.2014.00660 Pier's paper about Hausegarten Bacterial sequence information same data as the Biogeography of Deep-Sea Benthic Bacteria at Regional Scale paper by Marianne Jacob from our group but a different analysis.
Biogeography and Photosynthetic Biomass of Arctic Marine Pico-Eukaroytes during Summer of the Record Sea Ice Minimum 2012 DOI:10.1371/journal.pone.0148512 Paper from Dr. Katja Metfies has data about physical oceanography data and nutrient data measurements of ARKXXVII1-3 (in PANGAEA), Sea ice concentration (website Meereisportal) and genetic sequences European Nucleotide Archive (ENA) under Accession PRJEB1449.
Particle sedimentation patterns in the eastern Fram Strait during 2000–2005 DOI: 10.1016/j.dsr.2009.04.011 Biogenic particle flux paper associated with the data set.
Lateral supply and downward export of particulate matter from upper waters to the seafloor in the deep eastern Fram Strait DOI: 10.1016/j.dsr.2016.04.014 This paper may also help later to make the connection between surface plankton and particle flux
Dynamic benthic megafaunal communities: Assessing temporal variations in structure, composition and diversity at the Arctic deep-sea observatory HAUSGARTEN between 2004 and 2015 DOI: 10.1016/j.dsr.2017.02.008 paper with Diversity of benthic megafaunal communities data set.
Physical and ecological processes at a moving ice edge in the Fram Strait as observed with an AUV DOI:10.1016/j.dsr.2016.07.001 cites the Inorganic nutrients data and could possibly serve as some interesting links.
Exchange of warming deep waters across Fram Strait DOI:10.1016/j.dsr.2015.06.003 which seems to be a relevant use of the AWI physical oceanography and current meter data
Influence of snow depth and surface flooding on light transmission through Antarctic pack ice DOI:10.1002/2016JC012325 associated with AWI ice data.
Sea-ice retreat controls timing of summer plankton blooms in the Eastern Arctic Ocean DOI:10.1002/2016GL071232 Ideas presented by Christina at the 28.09.17 lab meeting, concerning sea ice retreat and algal arctic bloom processes.
Diatom Phenology in the Southern Ocean: Mean Patterns, Trends and the Role of Climate Oscillations DOI:10.3390/rs8050420 Associated with the plankton ecology project using Tillman satellite chlorophyll data and the plankton bloom ontology classes.
A Biologist's Guide to Mathmatical Modeling in Ecology and Evolution ISBN-13: 978-0691123448
Influence of the physical environment on polar phytoplankton blooms: A case study in the Fram St DOI:10.1016/j.jmarsys.2013.11.008 publication from Mariana Soppa about phytoplankton time series and phenology sent by Tilman.
Diversity and evolutionary history of plastids and their hosts doi: 10.3732/ajb.91.10.1481 Citation describing how algae don't have a common ancestor but their plastids seem to have a single cyanobacterial origin.
Microphytobenthos DOI: 10.1007/978-94-017-8801-4_291
Microphytobenthos: The ecological role of the “secret garden” of unvegetated, shallow-water marine habitats. I. Distribution, abundance and primary production https://doi.org/10.2307/1352224
Recurrent patterns of microdiversity in a temperate coastal marine environment doi: 10.1038/ismej.2017.165 Recent collaboration with Antonio and Pier on micro-diversity patterns in bloom and non-bloom conditions.
On the establishment, persistence, and inevitable extinction of populations and here DOI: 10.1007/s00285-015-0903-2 DIDN'T END UP USING THIS