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now passes regression tests
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kb1dds committed Jun 19, 2018
1 parent 6df3e42 commit f4fc242
Showing 1 changed file with 15 additions and 17 deletions.
32 changes: 15 additions & 17 deletions pysheaf/pysheaf.py
Original file line number Diff line number Diff line change
Expand Up @@ -880,38 +880,36 @@ def minimalExtend(self,assignment, activeCells=None, testSupport=None, method='n
if ord != 2:
warn('Kernel projection requires order 2 in minimalExtend')

# Build block matrix in which block columns are stalks over activeCells and block rows are stalks over cells supported in assignment
# Blocks are ultimate restriction maps (not just one hops!)
mat=np.zeros((sum([self.cells[i].stalkDim for i in support]),
sum([self.cells[i].stalkDim for i in ac])))

# Compile dictionary of rows
rowstarts=dict()
rowidx=0
for i in support:
rowstarts[i]=rowidx
rowidx+=self.cells[i].stalkDim

colidx=0 # Current column
newassignment = Section([sc for sc in assignment.sectionCells])

# Optimize each active cell independently
for i in ac:
if self.cells[i].stalkDim > 0:
# Matrix of all restrictions out of this cell into the support
mat=np.zeros((sum([self.cells[j].stalkDim for j in support]),
self.cells[i].stalkDim))

for cf in self.cofaces(i): # Iterate over all cofaces of this activeCell
try:
supportidx=support.index(cf.index)
mat[rowstarts[supportidx]:rowstarts[supportidx]+self.cells[supportidx].stalkDim,
colidx:colidx+self.cells[i].stalkDim]=cf.restriction.matrix
mat[rowstarts[supportidx]:rowstarts[supportidx]+self.cells[supportidx].stalkDim,:]=cf.restriction.matrix
except ValueError:
pass

colidx+=self.cells[i].stalkDim

# Use least squares to solve for global assignment given existing assignment
asg,bnds=self.serializeAssignment(assignment,activeCells=support) # Confusingly, activeSupport here refers *only* to the support of the assignment
print mat
result=np.linalg.lstsq(mat,asg)

# Deserialize assignment
return self.deserializeAssignment(result[0],ac,assignment)
# Use least squares to solve for assignment rooted at this cell given the existing assignment
asg,bnds=self.serializeAssignment(assignment,activeCells=support) # Confusingly, activeSupport here refers *only* to the support of the assignment
result=np.linalg.lstsq(mat,asg)
newassignment.sectionCells.append(SectionCell(i,result[0]))

return newassignment
elif self.isNumeric():
initial_guess, bounds = self.serializeAssignment(assignment,ac)
res=scipy.optimize.minimize( fun = lambda sec: self.consistencyRadius(self.deserializeAssignment(sec,ac,assignment), testSupport=testSupport, ord=ord),
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