Home

Welcome to the Recentrifuge wiki!

With Recentrifuge, researchers can analyze results from the Centrifuge classifier using interactive hierarchical pie charts with special emphasis on the score level of the classifications. In addition to control-substracted samples, shared taxa and exclusive taxa per sample are also provided with scores for each taxonomic level of interest, thus enabling robust comparative analysis of multiple samples, particularly in low biomass metagenomics studies.

• For installation of the software, please see the installation page.
• For instructions about how to run the main recentrifuge script, please see running recentrifuge page.
• For instructions about how to run the sequence extractor, please see running rextract page.

This wiki also contains pages with some tips and tricks about Centrifuge:

• To generate your updated nt database (or getting our last release), please check Centrifuge nt database.