MARMOT

Introduction

There have been many tools for joint dimensionality reduction (JDR) of multi-omics data, many of which have been benchmarked^1^, however the suitability of various tools seems to be largely dependent on the data and the downstream analysis being performed.

Here we present MARMOT (Model Analysis and compaRison for Multi-Omics Tools), an R tool for comparing JDR models in different conditions or with different inputs.

Installation guide

MARMOT is available as a GitHub package and can be installed using devtools.

install.packages("devtools") # if not already installed
library(devtools)
install_github("rtpop/MARMOT")

References

1. Cantini, L., Zakeri, P., Hernandez, C. et al. Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer. Nat Commun 12, 124 (2021). https://doi.org/10.1038/s41467-020-20430-7