Update README.md

README.md

@@ -1,38 +1,40 @@
-> :warning: The current code is incompatible with AmberTools21, so make sure you use
-> it with the version 22.  
-
-> :warning: A string interpolation bug was introduced in May 2022, but the fix wasn't 
-> released to the main branch. If you get nonsensical values in the last node in 
-> `0_final.string`/`0_final_CV.string`, please, reinstall ASM using the current 
-> version of the code.
+> :warning: The current code is incompatible with AmberTools22 or earlier, 
+> so make sure you use it with the version 23.  
 
 # string-amber
-Adaptive string method implementation in sander (AmberTools 22.3)
+Adaptive string method implementation in sander (AmberTools 23.05) and pmemd 
+(Amber 22.05)
 
 If you use this software in your work, please cite:
 https://doi.org/10.1021/acs.jpca.7b10842
 
 ### Installation
 Copy all the files from sander/ and lapack/ to the corresponding directories in 
-`amber20_src/AmberTools/src`. Then set `-DMPI=TRUE` in `amber20_src/build/run_cmake` and 
-continue with regular AmberTools installation.
+`amber22_src/AmberTools/src`. Then set `-DMPI=TRUE` in 
+`amber22_src/build/run_cmake` and continue with regular AmberTools installation.
+
+To install ASM for pmemd, copy all the files from pmemd/ directory to 
+`amber22_src/src/pmemd/src` and from there run
+```
+patch -p1 < ASM_amber_22.05.patch
+```
 
-The current files correspond to the version 22.3
-of AmberTools. The code *may* work with another subversion, but if you experience
+The current files correspond to the version 23.05
+of AmberTools and 22.05 of Amber. The code *may* work with another subversion, but if you experience
 any problems, check the current version by running
 ```
 ./update_amber --version
 ```
-Then, if the version is lower than 22.3, run
+Then, if the version is lower than 23.05, run
 ```
-./update_amber --update-to=AmberTools.3
+./update_amber --update-to=AmberTools.23.05
 ```
 and if it's newer, downgrade by running
 ```
-./update_amber --revert-to=AmberTools.3
+./update_amber --revert-to=AmberTools.23.05
 ```
 
-A Dockerfile for AmberTools22+ASM installation in a Docker container can be 
-found [here](docker/Dockerfile). AmberTools22.tar.bz2 file (as obtained from
+A Dockerfile for AmberTools23+ASM installation in a Docker container can be 
+found [here](docker/Dockerfile). AmberTools23.tar.bz2 file (as obtained from
 https://ambermd.org/GetAmber.php) must be available in the build context to 
 build the image.