Handle the new chemiscope sphinx module + fix linter

.gitignore

@@ -4,3 +4,4 @@ docs/src/examples/
 *egg-info/
 
 .nox/
+examples/_chemiscope_sphinx_data

developer/get_examples.py

@@ -12,7 +12,9 @@
 def get_examples():
     """The current list of examples, determined from the directories on disk"""
     return [
-        os.path.basename(os.path.normpath(file)) for file in glob.glob(f"{EXAMPLES}/*")
+        os.path.basename(os.path.normpath(file))
+        for file in glob.glob(f"{EXAMPLES}/*")
+        if os.path.isdir(file) and os.path.basename(file) != "_chemiscope_sphinx_data"
     ]
 
 

docs/src/conf.py

@@ -1,7 +1,9 @@
 import os
 from datetime import datetime
+
 from chemiscope.sphinx import ChemiscopeScraper
 
+
 ROOT = os.path.abspath(os.path.join("..", ".."))
 
 # Add any Sphinx extension module names here, as strings.

examples/dos-align/README.rst

@@ -1,5 +1,5 @@
 Optimizing the energy reference of the DOS during training
-==============================================
+==========================================================
 
 This example illustrates how one can optimize the energy reference of the
 DOS during model training. The dataset consists 104 Silicon diamond structures.

generate-gallery.py

@@ -2,10 +2,11 @@
 import shutil
 import sys
 
+import chemiscope  # noqa: F401
 import sphinx_gallery.gen_gallery
-import chemiscope
 from chemiscope.sphinx import ChemiscopeScraper
 
+
 HERE = os.path.realpath(os.path.dirname(__file__))