use '--use_gene_id' and '--phylo' for msa in github actions workflow

labgem · Feb 23, 2021 · 2d8ee46 · 2d8ee46
1 parent 8c1cd38
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diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -75,7 +75,7 @@ jobs:
       run: |
         cd testingDataset
         ppanggolin workflow --cpu 1 --anno organisms.gbff.list --output myannopang
-        ppanggolin msa --pangenome myannopang/pangenome.h5 --source dna --partition core -o myannopang/ -f
+        ppanggolin msa --pangenome myannopang/pangenome.h5 --source dna --partition core -o myannopang/ -f --use_gene_id --phylo
         ppanggolin msa --pangenome myannopang/pangenome.h5 --partition persistent -o myannopang/ -f --phylo
         cd -
     ## can test the remaining options in 'annotate', 'cluster' (when reading cluster files) and 'align'
diff --git a/VERSION b/VERSION
@@ -1 +1 @@
-1.1.135
+1.1.136