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PPanGGOLiN 1.1.96
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@axbazin axbazin released this 04 Sep 14:18
· 1730 commits to master since this release
1.1.96
3c089bd
  • can customize the clustering mode of mmseqs2
  • add the possibility to read pseudogenes in the 'align' submodule
  • defrag with connected component clustering is now the default clustering strategy
    • due to this, there is a new option --no-defrag to use the previous clustering strategy
  • improved option checking

Bug fixes:

  • cope with contigs having identical identifiers in different genomes ( see #34 )
  • can change the duplication margin in 'rgp' without crashing
  • other minor technical bugs in 'align'
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