Merge pull request #2 from lagadic/master

Merge lagadic/visp to master

.github/workflows/coverage.yml

@@ -19,7 +19,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu
@@ -31,7 +31,7 @@ jobs:
       run: dpkg --list | grep compiler
 
     - name: Install dependencies
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev lcov gcovr
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev lcov gcovr
 
     - name: Clone visp-images
       env:
@@ -46,7 +46,7 @@ jobs:
       run: |
         mkdir build
         cd build
-        cmake .. -DCMAKE_BUILD_TYPE=Release -DBUILD_COVERAGE=ON
+        cmake .. -DCMAKE_BUILD_TYPE=Release -DBUILD_COVERAGE=ON -DBUILD_DEPRECATED_FUNCTIONS=OFF
         cat ViSP-third-party.txt
 
     - name: Compile
@@ -58,10 +58,22 @@ jobs:
       working-directory: build
       run: |
         lcov --zerocounters --directory .
-        cmake --build . --target all
-        cmake --build . --target test
+        cmake --build . --target all -j$(nproc)
+        cmake --build . --target test -j$(nproc)
         lcov --directory . --capture --output-file visp-coverage.info
-        lcov --remove visp-coverage.info '/usr/*' '/home/runner/work/visp/visp/3rdparty/*' --output-file visp-coverage.cleaned
+        lcov --remove visp-coverage.info \
+          '/usr/*' \
+          '*/private/*' \
+          '*/test/*' \
+          "/home/runner/work/visp/visp/3rdparty/*" \
+          "/home/runner/work/visp/visp/demo/*" \
+          "/home/runner/work/visp/visp/example/*" \
+          "/home/runner/work/visp/visp/samples/*" \
+          "/home/runner/work/visp/visp/modules/gui*" \
+          "/home/runner/work/visp/visp/modules/io/src/parallel-port*" \
+          "/home/runner/work/visp/visp/modules/robot*" \
+          "/home/runner/work/visp/visp/modules/sensor*" \
+          --output-file visp-coverage.cleaned
 
     - name: Upload report to Codecov
       uses: codecov/codecov-action@v2

.github/workflows/ios.yml

@@ -23,7 +23,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: |

.github/workflows/macos-ustk.yml

@@ -23,7 +23,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: |
@@ -34,15 +34,15 @@ jobs:
       run: system_profiler SPSoftwareDataType
 
     - name: Install dependencies
-      run: brew install libpng libjpeg libdc1394 opencv pcl librealsense zbar vtk fftw armadillo
+      run: brew install libpng libjpeg libdc1394 opencv pcl librealsense zbar vtk fftw armadillo nlohmann-json
 
     - name: Clone visp-images
       env:
         BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
       # https://remarkablemark.org/blog/2022/09/25/check-git-branch-exists-in-remote-repository/
       run: |
         git clone --depth 1 https://github.com/lagadic/visp-images ${HOME}/visp-images
-        echo "VISP_INPUT_IMAGE_PATH=$HOME" >> $GITHUB_ENV
+        echo "VISP_INPUT_IMAGE_PATH=$HOME/visp-images" >> $GITHUB_ENV
         echo ${VISP_INPUT_IMAGE_PATH}
 
     - name: Clone ustk-dataset

.github/workflows/macos.yml

@@ -23,7 +23,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: |
@@ -34,7 +34,7 @@ jobs:
       run: system_profiler SPSoftwareDataType
 
     - name: Install dependencies
-      run: brew install libpng libjpeg libdc1394 opencv pcl librealsense zbar pkg-config
+      run: brew install libpng libjpeg libdc1394 opencv pcl librealsense zbar pkg-config nlohmann-json
 
     - name: Install java dependencies
       run: |
@@ -49,7 +49,7 @@ jobs:
       # https://remarkablemark.org/blog/2022/09/25/check-git-branch-exists-in-remote-repository/
       run: |
         git clone --depth 1 https://github.com/lagadic/visp-images ${HOME}/visp-images
-        echo "VISP_INPUT_IMAGE_PATH=$HOME" >> $GITHUB_ENV
+        echo "VISP_INPUT_IMAGE_PATH=$HOME/visp-images" >> $GITHUB_ENV
         echo ${VISP_INPUT_IMAGE_PATH}
 
     - name: Clone visp_sample
@@ -76,7 +76,7 @@ jobs:
 
     - name: Run unit tests
       working-directory: build
-      run: ctest -j$(sysctl -n hw.logicalcpu) --output-on-failure
+      run: ctest -j$(sysctl -n hw.logicalcpu) --output-on-failure -V
 
     - name: ViSP as 3rdparty with cmake
       run: |
@@ -111,7 +111,8 @@ jobs:
       run: |
         cd ${HOME}/visp_sample
         export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/tmp/usr/local/lib/pkgconfig
-        /tmp/usr/local/bin/visp-config --cflags
-        /tmp/usr/local/bin/visp-config --libs
+        export VISP_INSTALL_PREFIX=/tmp/usr/local
+        $VISP_INSTALL_PREFIX/bin/visp-config --cflags
+        $VISP_INSTALL_PREFIX/bin/visp-config --libs
         make -j$(sysctl -n hw.logicalcpu) -f Makefile.visp-config
         make -j$(sysctl -n hw.logicalcpu) -f Makefile.visp-config clean

.github/workflows/other-arch-isolated.yml

@@ -47,7 +47,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Run on arch
       uses: uraimo/[email protected]

.github/workflows/other-arch.yml

@@ -45,7 +45,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Run on arch
       uses: uraimo/[email protected]
@@ -64,7 +64,7 @@ jobs:
           apt-get update && apt-get install -y libssl-dev libusb-1.0-0-dev pkg-config libgtk-3-dev libglfw3-dev libgl1-mesa-dev libglu1-mesa-dev
 
           git clone --depth 1 https://github.com/lagadic/visp-images ${HOME}/visp-images
-          export VISP_INPUT_IMAGE_PATH=$HOME
+          export VISP_INPUT_IMAGE_PATH=$HOME/visp-images
           echo ${VISP_INPUT_IMAGE_PATH}
 
           pwd

.github/workflows/ubuntu-3rdparty.yml

@@ -24,7 +24,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu
@@ -37,11 +37,11 @@ jobs:
 
     - name: Install dependencies for ubuntu 18.04 and 20.04
       if: matrix.os != 'ubuntu-22.04'
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-22-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-22-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev
 
     - name: Install dependencies for ubuntu 22.04
       if: matrix.os == 'ubuntu-22.04'
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev
 
     - name: Clone camera_localization
       run: |

.github/workflows/ubuntu-contrib.yml

@@ -24,7 +24,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu
@@ -37,11 +37,11 @@ jobs:
 
     - name: Install dependencies for ubuntu 18.04 and 20.04
       if: matrix.os != 'ubuntu-22.04'
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-22-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-22-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev
 
     - name: Install dependencies for ubuntu 22.04
       if: matrix.os == 'ubuntu-22.04'
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev
 
     - name: Clone visp_contrib
       run: |

.github/workflows/ubuntu-dep-apt.yml

@@ -25,7 +25,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu
@@ -38,19 +38,19 @@ jobs:
 
     - name: Install dependencies for ubuntu 18.04 and 20.04
       if: matrix.os != 'ubuntu-22.04'
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-22-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-22-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev
 
     - name: Install dependencies for ubuntu 22.04
       if: matrix.os == 'ubuntu-22.04'
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev
 
     - name: Clone visp-images
       env:
         BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
       # https://remarkablemark.org/blog/2022/09/25/check-git-branch-exists-in-remote-repository/
       run: |
         git clone --depth 1 https://github.com/lagadic/visp-images ${HOME}/visp-images
-        echo "VISP_INPUT_IMAGE_PATH=$HOME" >> $GITHUB_ENV
+        echo "VISP_INPUT_IMAGE_PATH=$HOME/visp-images" >> $GITHUB_ENV
         echo ${VISP_INPUT_IMAGE_PATH}
 
     - name: Clone visp_sample
@@ -104,9 +104,10 @@ jobs:
       run: |
         cd ${HOME}/visp_sample
         export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/tmp/usr/local/lib/pkgconfig
+        export VISP_INSTALL_PREFIX=/tmp/usr/local
         CC=${{ matrix.compiler.CC }}
         CXX=${{ matrix.compiler.CXX }}
-        /tmp/usr/local/bin/visp-config --cflags
-        /tmp/usr/local/bin/visp-config --libs
+        $VISP_INSTALL_PREFIX/bin/visp-config --cflags
+        $VISP_INSTALL_PREFIX/bin/visp-config --libs
         make CXX=${{ matrix.compiler.CXX }} -j$(nproc) -f Makefile.visp-config
         make CXX=${{ matrix.compiler.CXX }} -j$(nproc) -f Makefile.visp-config clean

.github/workflows/ubuntu-dep-src.yml

@@ -23,7 +23,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu
@@ -47,6 +47,7 @@ jobs:
         sudo apt-get install -y libx11-dev libv4l-dev gfortran liblapack-dev libeigen3-dev
         sudo apt-get install -y libssl-dev libusb-1.0-0-dev pkg-config libgtk-3-dev libglfw3-dev libgl1-mesa-dev libglu1-mesa-dev
         sudo apt-get install -y mesa-common-dev mesa-utils freeglut3-dev libflann-dev libboost-all-dev
+        sudo apt-get install -y nlohmann-json3-dev
 
     - name: Install dependencies for ubuntu 22.04
       if: matrix.os == 'ubuntu-22.04'
@@ -117,7 +118,7 @@ jobs:
       # https://remarkablemark.org/blog/2022/09/25/check-git-branch-exists-in-remote-repository/
       run: |
         git clone --depth 1 https://github.com/lagadic/visp-images ${HOME}/visp-images
-        echo "VISP_INPUT_IMAGE_PATH=$HOME" >> $GITHUB_ENV
+        echo "VISP_INPUT_IMAGE_PATH=$HOME/visp-images" >> $GITHUB_ENV
         echo ${VISP_INPUT_IMAGE_PATH}
 
     - name: Configure CMake

.github/workflows/ubuntu-isolated.yml

@@ -26,7 +26,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu

.github/workflows/sanitizers.yml → .github/workflows/ubuntu-sanitizers.yml

@@ -25,7 +25,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu
@@ -34,22 +34,27 @@ jobs:
       run: lsb_release -a
 
     - name: Install dependencies
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libblas-dev libeigen3-dev nlohmann-json3-dev
+
+    - name: Linear algebra liblapack/libblas alternatives
+      run: |
+        update-alternatives --list liblapack.so.3-x86_64-linux-gnu
+        update-alternatives --list libblas.so.3-x86_64-linux-gnu
 
     - name: Clone visp-images
       env:
         BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
       # https://remarkablemark.org/blog/2022/09/25/check-git-branch-exists-in-remote-repository/
       run: |
         git clone --depth 1 https://github.com/lagadic/visp-images ${HOME}/visp-images
-        echo "VISP_INPUT_IMAGE_PATH=$HOME" >> $GITHUB_ENV
+        echo "VISP_INPUT_IMAGE_PATH=$HOME/visp-images" >> $GITHUB_ENV
         echo ${VISP_INPUT_IMAGE_PATH}
 
     - name: Configure CMake
       run: |
         mkdir build
         cd build
-        cmake .. -DCMAKE_C_FLAGS=${{ matrix.flags }} -DCMAKE_CXX_FLAGS=${{ matrix.flags }} -DCMAKE_LDFLAGS=${{ matrix.flags }} -DCMAKE_BUILD_TYPE=Debug
+        cmake .. -DCMAKE_C_FLAGS=${{ matrix.flags }} -DCMAKE_CXX_FLAGS=${{ matrix.flags }} -DCMAKE_LDFLAGS=${{ matrix.flags }} -DCMAKE_BUILD_TYPE=RelWithDebInfo -DUSE_OPENMP=OFF
         cat ViSP-third-party.txt
 
     - name: Compile

.github/workflows/ubuntu-ustk.yml

@@ -23,7 +23,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu
@@ -36,19 +36,19 @@ jobs:
 
     - name: Install dependencies for ubuntu 18.04 and 20.04
       if: matrix.os != 'ubuntu-22.04'
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-22-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-22-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev
 
     - name: Install dependencies for ubuntu 22.04
       if: matrix.os == 'ubuntu-22.04'
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev
 
     - name: Clone visp-images
       env:
         BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
       # https://remarkablemark.org/blog/2022/09/25/check-git-branch-exists-in-remote-repository/
       run: |
         git clone --depth 1 https://github.com/lagadic/visp-images ${HOME}/visp-images
-        echo "VISP_INPUT_IMAGE_PATH=$HOME" >> $GITHUB_ENV
+        echo "VISP_INPUT_IMAGE_PATH=$HOME/visp-images" >> $GITHUB_ENV
         echo ${VISP_INPUT_IMAGE_PATH}
 
     - name: Clone ustk-dataset

.github/workflows/valgrind.yml

@@ -19,7 +19,7 @@ jobs:
         access_token: ${{ github.token }}
 
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Print system information
       run: lscpu
@@ -28,15 +28,15 @@ jobs:
       run: lsb_release -a
 
     - name: Install dependencies
-      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev valgrind
+      run: sudo apt-get update && sudo apt-get install -y libx11-dev libdc1394-dev libv4l-dev liblapack-dev libopenblas-dev libeigen3-dev libopencv-dev nlohmann-json3-dev valgrind
 
     - name: Clone visp-images
       env:
         BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
       # https://remarkablemark.org/blog/2022/09/25/check-git-branch-exists-in-remote-repository/
       run: |
         git clone --depth 1 https://github.com/lagadic/visp-images ${HOME}/visp-images
-        echo "VISP_INPUT_IMAGE_PATH=$HOME" >> $GITHUB_ENV
+        echo "VISP_INPUT_IMAGE_PATH=$HOME/visp-images" >> $GITHUB_ENV
         echo ${VISP_INPUT_IMAGE_PATH}
 
     - name: Configure CMake