[Flink] Fix potential dead loop in source enumerator (#560) #698
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# SPDX-FileCopyrightText: 2023 LakeSoul Contributors | |
# | |
# SPDX-License-Identifier: Apache-2.0 | |
name: CI with flink cdc Test on HDFS | |
on: | |
push: | |
paths-ignore: | |
- "javadoc/**" | |
- "website/**" | |
- "cpp/**" | |
- "python/**" | |
- "**.md" | |
branches: | |
- 'main' | |
pull_request: | |
paths-ignore: | |
- "javadoc/**" | |
- "website/**" | |
- "cpp/**" | |
- "python/**" | |
- "**.md" | |
branches: | |
- 'main' | |
- 'release/**' | |
workflow_dispatch: | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Free Disk Space (Ubuntu) | |
uses: jlumbroso/free-disk-space@main | |
with: | |
tool-cache: false | |
android: true | |
dotnet: true | |
haskell: true | |
large-packages: false | |
docker-images: true | |
swap-storage: true | |
- uses: actions/checkout@v4 | |
- name: Set up JDK 11 | |
uses: actions/setup-java@v4 | |
with: | |
java-version: '11' | |
distribution: 'temurin' | |
cache: maven | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.9' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip setuptools wheel | |
pip install pymysql cryptography jproperties --no-cache-dir | |
wget https://repo1.maven.org/maven2/org/apache/flink/flink-s3-fs-hadoop/1.17.1/flink-s3-fs-hadoop-1.17.1.jar -O $HOME/flink-s3-fs-hadoop-1.17.1.jar | |
wget https://repo1.maven.org/maven2/org/apache/parquet/parquet-hadoop-bundle/1.12.3/parquet-hadoop-bundle-1.12.3.jar -O $HOME/parquet-hadoop-bundle-1.12.3.jar | |
wget https://repo1.maven.org/maven2/org/apache/flink/flink-parquet/1.17.1/flink-parquet-1.17.1.jar -O $HOME/flink-parquet-1.17.1.jar | |
- name: Install Protoc | |
uses: arduino/setup-protoc@v2 | |
with: | |
version: "23.x" | |
repo-token: ${{ secrets.GITHUB_TOKEN }} | |
- uses: actions-rs/toolchain@v1 | |
with: | |
profile: minimal | |
toolchain: stable | |
default: true | |
- uses: Swatinem/rust-cache@v2 | |
with: | |
workspaces: "./rust -> target" | |
- name: Cache Docker images | |
uses: ScribeMD/[email protected] | |
with: | |
key: docker-${{ runner.os }}-${{ hashFiles('rust/Cross.toml', 'docker/lakesoul-docker-compose-env/docker-compose.yml') }} | |
- name: Pull images | |
run: | | |
docker pull -q bitnami/spark:3.3.1 | |
- uses: actions-rs/cargo@v1 | |
with: | |
use-cross: true | |
command: build | |
args: '--manifest-path rust/Cargo.toml --target x86_64-unknown-linux-gnu --release --all-features' | |
- name: Build with Maven | |
run: | | |
mkdir -p rust/target/release | |
cp rust/target/x86_64-unknown-linux-gnu/release/liblakesoul_io_c.so rust/target/release | |
cp rust/target/x86_64-unknown-linux-gnu/release/liblakesoul_metadata_c.so rust/target/release | |
MAVEN_OPTS="-Xmx4000m" mvn -q -B clean package -f pom.xml -Pcross-build -DskipTests | |
- name: Get jar names | |
run: | | |
echo "FLINK_JAR_NAME=$(python script/get_jar_name.py lakesoul-flink)" >> $GITHUB_ENV | |
echo "FLINK_TEST_JAR_NAME=$(python script/get_jar_name.py lakesoul-flink | sed -e 's/.jar/-tests.jar/g')" >> $GITHUB_ENV | |
echo "SPARK_JAR_NAME=$(python script/get_jar_name.py lakesoul-spark)" >> $GITHUB_ENV | |
echo "SPARK_TEST_JAR_NAME=$(python script/get_jar_name.py lakesoul-spark | sed -e 's/.jar/-tests.jar/g')" >> $GITHUB_ENV | |
- name: Copy built jar to work-dir | |
run: | | |
cp ./lakesoul-flink/target/$FLINK_JAR_NAME ./script/benchmark/work-dir | |
cp ./lakesoul-flink/target/$FLINK_TEST_JAR_NAME ./script/benchmark/work-dir | |
cp ./lakesoul-spark/target/$SPARK_JAR_NAME ./script/benchmark/work-dir | |
cp ./lakesoul-spark/target/$SPARK_TEST_JAR_NAME ./script/benchmark/work-dir | |
- uses: beyondstorage/setup-hdfs@master | |
with: | |
hdfs-version: '3.3.6' | |
- name: Modify HDFS User Group Mapping | |
run: | | |
sed -i '/^<\/configuration>/i <property><name>hadoop.proxyuser.spark.hosts</name><value>*</value></property><property><name>hadoop.proxyuser.spark.groups</name><value>*</value></property>' $HADOOP_HOME/etc/hadoop/core-site.xml | |
- name: Modify HDFS Host | |
run: | | |
sed -i 's/localhost/172.17.0.1/g' $HADOOP_HOME/etc/hadoop/core-site.xml | |
sed -i 's/localhost/172.17.0.1/g' $HADOOP_HOME/etc/hadoop/hdfs-site.xml | |
$HADOOP_HOME/sbin/stop-dfs.sh | |
$HADOOP_HOME/sbin/start-dfs.sh | |
$HADOOP_HOME/bin/hadoop fs -chmod -R 777 / | |
- name: Deploy cluster | |
run: | | |
cd ./docker/lakesoul-docker-compose-env | |
docker compose pull -q | |
docker compose up -d | |
sleep 30s | |
- name: Start compaction task | |
run: | | |
cd ./script/benchmark/work-dir | |
nohup docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --proxy-user flink --driver-memory 2G --executor-memory 2G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --conf spark.hadoop.fs.s3.buffer.dir=/tmp --conf spark.hadoop.fs.s3a.buffer.dir=/tmp --conf spark.hadoop.fs.s3a.fast.upload.buffer=disk --conf spark.hadoop.fs.s3a.fast.upload=true --conf spark.dmetasoul.lakesoul.native.io.enable=true --class com.dmetasoul.lakesoul.spark.compaction.CompactionTask --master local[4] /opt/spark/work-dir/$SPARK_JAR_NAME --threadpool.size=10 --database="" --file_num_limit=5 --file_size_limit=10KB > compaction.log 2>&1 & | |
- name: Start flink mysql cdc task-1 | |
run: | | |
docker exec -t -u flink lakesoul-docker-compose-env-jobmanager-1 flink run -d -c org.apache.flink.lakesoul.entry.MysqlCdc /opt/flink/work-dir/$FLINK_JAR_NAME --source_db.host mysql --source_db.port 3306 --source_db.db_name test_cdc --source_db.user root --source_db.password root --source.parallelism 2 --sink.parallelism 4 --use.cdc true --warehouse_path hdfs://172.17.0.1:9000/lakesoul-test-bucket/data/ --flink.checkpoint hdfs://172.17.0.1:9000/lakesoul-test-bucket/chk --flink.savepoint hdfs://172.17.0.1:9000/lakesoul-test-bucket/svp --job.checkpoint_interval 5000 --server_time_zone UTC | |
sleep 30s | |
- name: Start flink source to sink task-2 | |
run: | | |
docker exec -t -u flink lakesoul-docker-compose-env-jobmanager-1 flink run -d -c org.apache.flink.lakesoul.test.benchmark.LakeSoulSourceToSinkTable -C file:///opt/flink/work-dir/$FLINK_JAR_NAME /opt/flink/work-dir/$FLINK_TEST_JAR_NAME --source.database.name test_cdc --source.table.name default_init --sink.database.name flink_sink --sink.table.name default_init --use.cdc true --hash.bucket.number 2 --job.checkpoint_interval 10000 --server_time_zone UTC --warehouse.path hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink-sink/data --flink.checkpoint hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink-sink/chk | |
sleep 30s | |
- name: Start flink DataGenSource without primary key task-3 | |
run: | | |
docker exec -t -u flink lakesoul-docker-compose-env-jobmanager-1 flink run -d -c org.apache.flink.lakesoul.test.benchmark.LakeSoulDataGenSourceTable -C file:///opt/flink/work-dir/$FLINK_JAR_NAME /opt/flink/work-dir/$FLINK_TEST_JAR_NAME --sink.database.name flink --sink.table.name sink_table --job.checkpoint_interval 10000 --server_time_zone UTC --warehouse.path hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink/ --flink.checkpoint hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink/chk --sink.parallel 2 --data.size 1000 --write.time 5 | |
- name: Download task dependency jar | |
run: | | |
cd ./script/benchmark/work-dir | |
if [ ! -e mysql-connector-java-8.0.30.jar ]; then wget -q https://repo1.maven.org/maven2/mysql/mysql-connector-java/8.0.30/mysql-connector-java-8.0.30.jar; fi | |
if [ ! -e flink-connector-jdbc-3.1.1-1.17.jar ]; then wget -q https://repo1.maven.org/maven2/org/apache/flink/flink-connector-jdbc/3.1.1-1.17/flink-connector-jdbc-3.1.1-1.17.jar; fi | |
if [ ! -e assertj-core-3.23.1.jar ]; then wget -q https://repo1.maven.org/maven2/org/assertj/assertj-core/3.23.1/assertj-core-3.23.1.jar; fi | |
- name: Create table and insert data | |
run: | | |
cd ./script/benchmark | |
python 1_create_table.py | |
docker exec -i lakesoul-docker-compose-env-mysql-1 bash /2_insert_table_data.sh | |
sleep 30s | |
- name: Start flink engine data check task | |
run: | | |
docker exec -t lakesoul-docker-compose-env-jobmanager-1 flink run -d -c org.apache.flink.lakesoul.test.benchmark.LakeSoulFlinkDataCheck -C file:///opt/flink/work-dir/$FLINK_JAR_NAME -C file:///opt/flink/work-dir/mysql-connector-java-8.0.30.jar -C file:///opt/flink/work-dir/flink-connector-jdbc-3.1.1-1.17.jar -C file:///opt/flink/work-dir/assertj-core-3.23.1.jar /opt/flink/work-dir/$FLINK_TEST_JAR_NAME --mysql.hostname mysql --mysql.database.name test_cdc --mysql.table.name default_init_1 --mysql.username root --mysql.password root --mysql.port 3306 --server.time.zone UTC --single.table.contract true --lakesoul.database.name test_cdc --lakesoul.table.name default_init_1 --flink.checkpoint hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink-engine/chk | |
sleep 30s | |
- name: Mysql cdc data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.Benchmark --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME | |
- name: Flink source to sink data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.Benchmark --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME --cdc.contract false --single.table.contract true | |
- name: Adding columns for tables and deleting some data from tables | |
run: | | |
cd ./script/benchmark | |
python3 3_add_column.py | |
python3 delete_data.py | |
docker exec -i lakesoul-docker-compose-env-mysql-1 bash /2_insert_table_data.sh | |
sleep 30s | |
- name: Start flink engine data check task | |
run: | | |
docker exec -t lakesoul-docker-compose-env-jobmanager-1 flink run -d -c org.apache.flink.lakesoul.test.benchmark.LakeSoulFlinkDataCheck -C file:///opt/flink/work-dir/$FLINK_JAR_NAME -C file:///opt/flink/work-dir/mysql-connector-java-8.0.30.jar -C file:///opt/flink/work-dir/flink-connector-jdbc-3.1.1-1.17.jar -C file:///opt/flink/work-dir/assertj-core-3.23.1.jar /opt/flink/work-dir/$FLINK_TEST_JAR_NAME --mysql.hostname mysql --mysql.database.name test_cdc --mysql.table.name default_init_1 --mysql.username root --mysql.password root --mysql.port 3306 --server.time.zone UTC --single.table.contract true --lakesoul.database.name test_cdc --lakesoul.table.name default_init_1 --flink.checkpoint hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink-engine/chk | |
sleep 30s | |
- name: Mysql cdc data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.Benchmark --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME | |
- name: Flink source to sink data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.Benchmark --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME --cdc.contract false --single.table.contract true | |
- name: Updating data in tables | |
run: | | |
cd ./script/benchmark | |
python3 4_update_data.py | |
sleep 30s | |
- name: Start flink engine data check task | |
run: | | |
docker exec -t lakesoul-docker-compose-env-jobmanager-1 flink run -d -c org.apache.flink.lakesoul.test.benchmark.LakeSoulFlinkDataCheck -C file:///opt/flink/work-dir/$FLINK_JAR_NAME -C file:///opt/flink/work-dir/mysql-connector-java-8.0.30.jar -C file:///opt/flink/work-dir/flink-connector-jdbc-3.1.1-1.17.jar -C file:///opt/flink/work-dir/assertj-core-3.23.1.jar /opt/flink/work-dir/$FLINK_TEST_JAR_NAME --mysql.hostname mysql --mysql.database.name test_cdc --mysql.table.name default_init_1 --mysql.username root --mysql.password root --mysql.port 3306 --server.time.zone UTC --single.table.contract true --lakesoul.database.name test_cdc --lakesoul.table.name default_init_1 --flink.checkpoint hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink-engine/chk | |
sleep 30s | |
- name: Mysql cdc data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --conf spark.dmetasoul.lakesoul.native.io.enable=true --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.Benchmark --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME | |
- name: Flink source to sink data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.Benchmark --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME --cdc.contract false --single.table.contract true | |
- name: Dropping columns and deleting some data in tables | |
run: | | |
cd ./script/benchmark | |
python3 6_drop_column.py | |
python3 delete_data.py | |
docker exec -i lakesoul-docker-compose-env-mysql-1 bash /2_insert_table_data.sh | |
sleep 30s | |
- name: Start flink engine data check task | |
run: | | |
docker exec -t lakesoul-docker-compose-env-jobmanager-1 flink run -d -c org.apache.flink.lakesoul.test.benchmark.LakeSoulFlinkDataCheck -C file:///opt/flink/work-dir/$FLINK_JAR_NAME -C file:///opt/flink/work-dir/mysql-connector-java-8.0.30.jar -C file:///opt/flink/work-dir/flink-connector-jdbc-3.1.1-1.17.jar -C file:///opt/flink/work-dir/assertj-core-3.23.1.jar /opt/flink/work-dir/$FLINK_TEST_JAR_NAME --mysql.hostname mysql --mysql.database.name test_cdc --mysql.table.name default_init_1 --mysql.username root --mysql.password root --mysql.port 3306 --server.time.zone UTC --single.table.contract true --lakesoul.database.name test_cdc --lakesoul.table.name default_init_1 --flink.checkpoint hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink-engine/chk | |
sleep 30s | |
- name: Mysql cdc data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --conf spark.dmetasoul.lakesoul.native.io.enable=true --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.Benchmark --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME | |
- name: Flink source to sink data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.Benchmark --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME --cdc.contract false --single.table.contract true | |
- name: Table without primary key data accuracy verification task | |
run: | | |
cd ./script/benchmark | |
docker run --cpus 2 -m 5000m --net lakesoul-docker-compose-env_default --rm -t -v $HADOOP_HOME:/opt/hadoop --env HADOOP_HOME=/opt/hadoop -v ${PWD}/work-dir:/opt/spark/work-dir --env lakesoul_home=/opt/spark/work-dir/lakesoul.properties bitnami/spark:3.3.1 spark-submit --driver-memory 4G --executor-memory 4G --conf spark.driver.memoryOverhead=1500m --conf spark.executor.memoryOverhead=1500m --jars /opt/spark/work-dir/$SPARK_JAR_NAME,/opt/spark/work-dir/mysql-connector-java-8.0.30.jar --class org.apache.spark.sql.lakesoul.benchmark.FlinkWriteDataCheck --master local[4] /opt/spark/work-dir/$SPARK_TEST_JAR_NAME --csv.path hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink/csv --lakesoul.table.path hdfs://172.17.0.1:9000/lakesoul-test-bucket/flink/sink_table --server.time.zone UTC | |
- name: Print Flink Log | |
if: always() | |
run: | | |
docker logs lakesoul-docker-compose-env-jobmanager-1 > flink-session-cluster.log | |
- name: Upload Log | |
if: always() | |
continue-on-error: true | |
uses: actions/upload-artifact@v4 | |
with: | |
name: flink-cluster-log | |
path: flink-session-cluster.log | |
retention-days: 5 | |
if-no-files-found: error | |
- name: Upload Compaction Log | |
uses: actions/upload-artifact@v4 | |
with: | |
name: lakesoul-compaction-log | |
path: ./script/benchmark/work-dir/compaction.log | |
retention-days: 3 | |
if-no-files-found: error |