v0.14.3

Added

• quant.lfq_settings.combine_charge_state boolean option. By default this is set to true, and LFQ is performed on the peptide-level, where all charge states are treated as the same precursor. Setting this to false performs LFQ on the peptide-charge-level, where each charge state will be treated separately.

Changed

• Percolator output format now contains the integer-valued charge state encoded in the z=other column, if the charge state is outside the range 2-6 (e.g. a value of 7 will appear in the z=other column, rather than it being one-hot encoded)
• LFQ uses the the charge state range from the precursor_charge configuration option for tracing MS1 peaks