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@lazear lazear released this 02 Nov 00:16
· 150 commits to master since this release
v0.6.0
308364f

Initial support for PeptideShaker v2.2.18-beta

Added

  • Changelog
  • rank column added to output file
  • database.generate_decoys parameter, which turns off internal decoy generation. This enables the use of FASTA databases for SearchGUI/PeptideShaker

Changed

  • Base ProForma v2 notation is used for peptide modifications, i.e. "[+304.2071]-PEPTIDEM[+15.9949]AAC[+57.0214]H"
  • scannr column now contains the full nativeID/spectrum title from the mzML file, i.e. "controllerType=0 controllerNumber=1 scan=30069"
  • discriminant_score column renamed to sage_discriminant_score for PeptideShaker recognition
  • database.decoy_prefix JSON option changed to database.decoy_tag. This allows decoy tagging to occur anywhere within the accession: "sp|P01234_REVERSED|HUMAN"
  • Output file renamed: results.pin to results.sage.tsv
  • Output file renamed: quant.csv to quant.tsv
  • Rename pin_paths to output_paths in results.json file

Full Changelog: v0.5.1...v0.6.0

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