Update genesis to fix bug in pileup reader with sample filtering

lczech · Sep 13, 2021 · b0f8837 · b0f8837
1 parent 60d8f02
commit b0f8837
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -128,7 +128,7 @@ include( "${CMAKE_CURRENT_LIST_DIR}/tools/cmake/DownloadDependency.cmake" )
 # These are replaced by tools/cmake/update_dependencies.sh to the hashes that are currently checked out.
 # Thus, do not replace the hashes manually!
 SET( CLI11_COMMIT_HASH "5cb3efabce007c3a0230e4cc2e27da491c646b6c" ) #CLI11_COMMIT_HASH#
-SET( genesis_COMMIT_HASH "139ef2822389fd69776bfe7ea3c70858ed4b0718" ) #genesis_COMMIT_HASH#
+SET( genesis_COMMIT_HASH "00cb9880a8942cd518533f795d2ab55462a7a73e" ) #genesis_COMMIT_HASH#
 
 # Call the github download function, which takes four arguments:
 #  - LIBPATH    : Path to the libracy dir where dependencies are stored.

diff --git a/libs/genesis b/libs/genesis
+18 −6		lib/genesis/placement/function/operators.cpp
+11 −7		lib/genesis/population/formats/simple_pileup_reader.cpp
+11 −7		lib/genesis/population/formats/variant_pileup_reader.cpp
+4 −0		lib/genesis/population/functions/variant.cpp
+185 −46		lib/genesis/tree/drawing/heat_tree.cpp
+7 −4		lib/genesis/tree/drawing/heat_tree.hpp
+12 −6		lib/genesis/tree/mass_tree/functions.cpp
+1 −0		lib/genesis/utils.hpp
+6 −6		lib/genesis/utils/math/bitvector/helper.cpp
+1 −1		lib/genesis/utils/math/statistics.hpp