Update genesis to fix #23

lczech · Jun 18, 2024 · c469410 · c469410
1 parent 1efabc3
commit c469410
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -168,7 +168,7 @@ include( "${CMAKE_CURRENT_LIST_DIR}/tools/cmake/DownloadDependency.cmake" )
 # These are replaced by tools/cmake/update_dependencies.sh to the hashes that are currently checked out.
 # Thus, do not replace the hashes manually!
 SET( CLI11_COMMIT_HASH "5cb3efabce007c3a0230e4cc2e27da491c646b6c" ) #CLI11_COMMIT_HASH#
-SET( genesis_COMMIT_HASH "2963f5c9f17fa5cb27e894af523c14f711b5c512" ) #genesis_COMMIT_HASH#
+SET( genesis_COMMIT_HASH "76b24dde721eacea3ec8186dd7a9a79915011dd6" ) #genesis_COMMIT_HASH#
 
 # Call the github download function, which takes four arguments:
 #  - LIBPATH    : Path to the libracy dir where dependencies are stored.

diff --git a/libs/genesis b/libs/genesis
+13 −3		CMakeLists.txt
+7 −7		lib/genesis/population/format/sync_reader.cpp
+1 −2		lib/genesis/sequence.hpp
+0 −134		lib/genesis/sequence/formats/fasta_output_stream.hpp
+32 −40		lib/genesis/sequence/formats/fasta_reader.cpp
+4 −2		lib/genesis/sequence/formats/fasta_reader.hpp
+19 −24		lib/genesis/sequence/formats/fastq_reader.cpp
+2 −2		lib/genesis/sequence/formats/fastq_reader.hpp
+110 −93		lib/genesis/sequence/formats/fastq_writer.cpp
+90 −13		lib/genesis/sequence/formats/fastq_writer.hpp
+16 −11		lib/genesis/sequence/formats/fastx_input_stream.hpp
+71 −20		lib/genesis/sequence/formats/fastx_output_stream.hpp
+30 −28		lib/genesis/sequence/functions/quality.cpp
+1 −0		lib/genesis/tree.hpp
+236 −0		lib/genesis/tree/formats/table/reader.cpp
+61 −0		lib/genesis/tree/formats/table/reader.hpp
+319 −10		lib/genesis/utils/color/names.cpp
+36 −7		lib/genesis/utils/color/names.hpp
+18 −0		lib/genesis/utils/core/info.cpp
+10 −0		lib/genesis/utils/core/info.hpp
+2 −0		lib/genesis/utils/core/options.cpp
+3 −2		lib/genesis/utils/formats/svg/axis.cpp
+508 −471		lib/genesis/utils/io/input_stream.cpp
+124 −294		lib/genesis/utils/io/input_stream.hpp
+435 −4		lib/genesis/utils/io/parser.cpp
+61 −44		lib/genesis/utils/io/parser.hpp
+35 −14		lib/genesis/utils/text/string.cpp
+43 −36		lib/genesis/utils/text/string.hpp
+1 −1		test/src/sequence/fasta.cpp
+1 −1		test/src/sequence/fastq.cpp
+48 −4		test/src/sequence/quality.cpp
+200 −0		test/src/tree/table.cpp
+17 −17		test/src/utils/containers/optional.cpp
+266 −25		test/src/utils/io/input_stream.cpp
+7 −7		test/src/utils/tools/color.cpp
+172 −0		tools/cmake/FindAVX.cmake
+80 −0		tools/cmake/IncludeAVX.cmake