Correct for loop to compute CHANG_STR_AGES in PRE_FATE.params.PFGsucc… #258
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| name: CODECOV-check | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # Increment this version when we want to clear cache | |
| env: | |
| cache-version: v1 | |
| r-version: 4.1 | |
| jobs: | |
| CODECOV-check: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| r-version: ${{ env.r-version }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ env.cache-version }}-${{ runner.os }}-${{ env.r-version }}-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ env.cache-version }}-${{ runner.os }}-${{ env.r-version }}- | |
| - name: Install system dependencies on Linux | |
| run: | | |
| sudo apt install libgdal-dev libproj-dev libgeos-dev libudunits2-dev libgfortran5 | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "18.04"))') | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_version("BH", version='1.75.0-0') | |
| remotes::install_cran("covr") | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: | | |
| R CMD INSTALL . | |
| Rscript -e 'covr::codecov()' | |