Version 1.2.5:

- Added mode 'continue_all_genomes': start from the reference genomes loop and process all of them again.
 Copy the config.txt file to config_old.txt and write it again without the processed reference genomes.
- Changed the column names of the genome-specific output files to match the names of the summary output files.
- Updated manual and README.

README.md

@@ -78,10 +78,17 @@ python syntracker.py -target Sample_Data/Input_example/Target_genomes/ -ref Samp
 ```
 
 **Continue a previous run that has been terminated:**
+
+1. Continue from the last reference genome that has been processed without finishing successfully:
 ```
 python syntracker.py -out SynTracker_output/ -mode continue
 ```
 
+2. Process all the reference genome again without repeating the blastDB building stage:
+```
+python syntracker.py -out SynTracker_output/ -mode continue_all_genomes
+```
+
 ### A description of all SynTracker's possible command line arguments:
 
 ```