Merge pull request #309 from lilab-bcb/yiming

Bug fix for deseq2 function with one contrast
lilab-bcb · Jun 28, 2024 · 40d2646 · 40d2646
2 parents bee45e3 + f966aba
commit 40d2646
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pegasus/tools/pseudobulk.py b/pegasus/tools/pseudobulk.py
@@ -275,7 +275,7 @@ def _run_pydeseq2(
     )
     dds.deseq2()
 
-    if isinstance(contrasts, str):
+    if isinstance(contrasts, Tuple):
         contrasts = [contrasts]
     if isinstance(de_key, str):
         de_key = [de_key]
@@ -338,7 +338,7 @@ def _run_rdeseq2(
 
     dds = deseq2.DESeq(dds)
 
-    if isinstance(contrasts, str):
+    if isinstance(contrasts, Tuple):
         contrasts = [contrasts]
     if isinstance(de_key, str):
         de_key = [de_key]