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Improve Scatter and Spatial plots #294

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yihming merged 4 commits into master from yiming

Apr 25, 2024

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yihming commented Apr 24, 2024 •

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For scatter function:

Add one new parameter aspect. Default is auto to enforce square plots; set to equal for the actual y to x axis ratio.

For spatial function:

Now accepts non-Visium data, which may not have spatial images stored in data.img field.
Add parameter aspect. Default is equal.
Add parameter margin_percent to set the image margin to the 4 sides.
Add parameters restrictions, show_background and palettes.
Add parameter y_flip with default True. Set to False if the spatial y-coordinates start from bottom.

In addition, when plotting Visium data spatially with no image background:

Set resolution=None.
Set y_flip=True.

yihming added 4 commits

April 24, 2024 21:59


          Allow specify aspect in scatter; spatial plot accepts non-Visium data

f434bad


          remove unnecessary SSH commands

c0bfbcd


          fetch test data via HTTPS

ab47756


          add more parameters

eb95d41

yihming merged commit 8eef3c6 into master

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