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This repository contains methods for the automatic extraction of various characteristics of trees in point clouds using advanced analytical methods.
Plant phenotyping using computer vision: Compute geometrical traits and analyze plant surface colors
An algorithm to extract skeletons from discrete point clouds of tree branches collected by terrestrial laser scanners
Pipeline to take in point clouds and return skeletal representation
A python tool for fitting primitives 3D shapes in point clouds using RANSAC algorithm
Point2Skeleton: Learning Skeletal Representations from Point Clouds (CVPR2021)
Python Deep Learning, Third Edition, published by Packt
The detection of peaks and valleys in a 1d-vector or 2d-array (image)
Neural Medial Axis Approximation of Point Clouds for 3D Tree Skeletonization
Semantic segmentation models with 500+ pretrained convolutional and transformer-based backbones.
Python package for calculation mahalanobis distances from NumPy arrays
A more object-oriented python implementation of multi-template matching (mtm), relying on scikit-image and shapely.
Object-recognition using multiple templates in python
Scale and rotation invariant template matcher
A new method for the space-time registration of a growing plant based on matching the plant at different geometric scales. The proposed method starts with the creation of a topological skeleton of …
C++ implementation of the Medial Axis Shrinking Ball algorithm
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Clustering routines for the unit sphere
Open source material which involves point cloud formatting, branch and end point identification of a 3D skeleton
Learnable Skeleton-Aware 3D Point Cloud Sampling
Curve-skeleton Extraction from Incomplete Point Cloud
Rembg is a tool to remove images background
Pruning Filter in Filter(NeurIPS2020)
work in progress of trait extraction in interacting bean roots