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@taoliu taoliu released this 20 Sep 16:44
· 1028 commits to master since this release
v2.1.3
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Learn about vigilant mode.

2019-09-19 Tao Liu [email protected]

* Features added

1) Support Docker auto-deploy. PR #309

2) Support Travis CI auto-testing, update unit-testing
scripts, and enable subcommand testing on small datasets.

3) Update README documents. #297 PR #306

4) `cmbreps` supports more than 2 replicates. Merged from PR #304
@Maarten-vd-Sande and PR #307 (our own chi-sq test code)

5) `--d-min` option is added in `callpeak` and `predictd`, to
exclude predictions of fragment size smaller than the given
value. Merged from PR #267 @shouldsee.

6) `--buffer-size` option is added in `predictd`, `filterdup`,
`pileup` and `refinepeak` subcommands. Users can use this option
to decrease memory usage while there are a large number of contigs
in the data. Also, now `callpeak`, `predictd`, `filterdup`,
`pileup` and `refinepeak` will suggest users to tweak
`--buffer-size` while catching a MemoryError. #313 PR #314

* Bugs fixed

1) #265 Fixed a bug where the pseudocount hasn't been applied
while calculating p-value score in ScoreTrack object.

2) Fixed bdgbroadcall so that it will report those broad peaks
without strong peak inside, a consistent behavior as `callpeak
--broad`.

3) Rename COPYING to LICENSE.
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