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Quarto #12

Merged
merged 10 commits into from
May 6, 2024
Merged

Quarto #12

merged 10 commits into from
May 6, 2024

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maehr
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@maehr maehr commented Feb 12, 2024

Pull request

Proposed changes

Types of changes

  • New feature (non-breaking change which adds functionality).
  • Enhancement (non-breaking change which enhances functionality)
  • Bug Fix (non-breaking change which fixes an issue).
  • Breaking change (fix or feature that would cause existing functionality to change).

Checklist

  • I have read the README document.
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly.

Summary by CodeRabbit

  • New Features
    • Implemented a workflow for rendering and publishing content using Quarto to platforms like GitHub Pages, Netlify, and others.
    • Introduced CSS styling for the project.
  • Documentation
    • Added and updated various project management and report documents with clearer section headers and instructions.
  • Chores
    • Updated .gitignore to exclude the .quarto/ directory.

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coderabbitai bot commented Feb 12, 2024

Walkthrough

The update brings a new Quarto publishing workflow for content rendering and publishing, enhances project documentation, and includes a CSS file for styling. It refines the project's structure by updating markdown files and comments, and excludes the .quarto/ directory in the .gitignore list for better version control.

Changes

File(s) Change Summary
.github/workflows/quarto-publish.yml Introduced a workflow for rendering and publishing content with Quarto.
.gitignore Updated to exclude .quarto/ directory and other directories.
index.qmd, report.md Added and updated markdown files for better content organization.
project-management/... Enhanced comments and added section headers in markdown files.
styles.css Included CSS styles for the project.

Possibly related issues

  • Migrating to Quarto.org #11: The changes in this PR align with the objective of migrating to Quarto by implementing a Quarto publishing workflow, potentially improving site functionality as requested in the issue.

Poem

Among the code's whispers, a rabbit does play,
Dancing through updates in its own special way.
Markdown and CSS, in harmony they meet,
Crafting a tale that's both stylish and neat.
🌟 With each line it adds, a story unfolds,
Guided by the coderabbit, wise and bold.
For in every change, no matter how small or grand,
A project evolves under its magical hand. 🐇✨

` and added a section header for "People" in the `project-management/people.md` file.

project-management/project-report.md: Updated a placeholder comment to a section header for the "Project Report" in the markdown file.


project-management/tools.md: Updated a placeholder comment to an HTML comment in the Tools section of the document.


report.md: Added a comment block (<!-- TODO -->) and updated the document title from # TODO to # Report. The content remains unchanged.


styles.css: The new file styles.css contains CSS styles for the project.


README.md: ## Short Summary
The change involves enhancing the accessibility of documentation by adding support for Quarto alongside gh-pages. Additionally, there is a new step to customize documentation using Quarto in the usage section.

Alterations to the Declarations of Exported or Public Entities

  • Accessible documentation via [gh-pages](https://help.github.com/en/articles/configuring-a-publishing-source-for-github-pages) in README.mdAccessible documentation via [gh-pages](https://help.github.com/en/articles/configuring-a-publishing-source-for-github-pages) and [Quarto](https://quarto.org/) in README.md
  • [ ] enable [gh-pages](https://help.github.com/en/articles/configuring-a-publishing-source-for-github-pages) in README.md[ ] enable [gh-pages](https://help.github.com/en/articles/configuring-a-publishing-source-for-github-pages) and [ ] customize the documentation with [Quarto](https://quarto.org/docs/websites/#workflow) in README.md

README.template.md: ## Short Summary

The diff involves updating the file paths for the license files in the repository from using a .md extension to explicitly using .md in the links.

Alterations to the declarations of exported or public entities

  • LICENSE-CCBY in README.template.mdLICENSE-CCBY.md in README.template.md
  • LICENSE-AGPL in README.template.mdLICENSE-AGPL.md in README.template.md

-->


Recent Review Details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits Files that changed from the base of the PR and between c40aa13 and 6906e39.
Files ignored due to path filters (1)
  • _quarto.yml is excluded by !**/*.yml
Files selected for processing (2)
  • README.md (3 hunks)
  • README.template.md (1 hunks)
Additional Context Used
LanguageTool (90)
README.md (64)

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Additional comments not posted (6)
README.template.md (2)

84-84: Ensure the license link is correct.

Verification successful

The verification script has confirmed that the LICENSE-CCBY.md file exists in the repository. This directly addresses the review comment which asked to ensure the correctness of the license link in the README.template.md file. Since the file exists, the link to LICENSE-CCBY.md in the README is valid, assuming it is correctly formatted as a relative link.

Final Response:

The link to the LICENSE-CCBY.md file in the README.template.md is correct as the file exists in the repository.

Scripts Executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Description: Verify the existence of the LICENSE-CCBY.md file.

# Test: Check if the LICENSE-CCBY.md file exists in the repository.
if [ -f "LICENSE-CCBY.md" ]; then
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fi

Length of output: 85


86-86: Ensure the license link is correct.

Verification successful

The verification script has confirmed that the LICENSE-AGPL.md file exists in the repository. This aligns with the README template's reference to the license file, indicating that the link to the license in the README is correct.

License Link Verified Successfully

  • The LICENSE-AGPL.md file exists in the repository, confirming the accuracy of the license link in the README template.
Scripts Executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Description: Verify the existence of the LICENSE-AGPL.md file.

# Test: Check if the LICENSE-AGPL.md file exists in the repository.
if [ -f "LICENSE-AGPL.md" ]; then
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else
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fi

Length of output: 85

README.md (4)

33-33: Ensure all Markdown links are correctly paired with their closing brackets.


82-82: Ensure all Markdown links are correctly paired with their closing brackets.


144-144: Ensure the license link is correct.

Verification successful

The verification script has confirmed that the LICENSE-CCBY.md file exists in the repository. This directly addresses the review comment which asked to ensure the correctness of the license link in the README.md file. Since the file exists, the link is likely correct, assuming it is properly formatted in the Markdown file to link to this existing file.


License Link Verified

The link to the LICENSE-CCBY.md file in the README.md is correct as the file exists in the repository. No further action is required regarding this issue.

Scripts Executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Description: Verify the existence of the LICENSE-CCBY.md file.

# Test: Check if the LICENSE-CCBY.md file exists in the repository.
if [ -f "LICENSE-CCBY.md" ]; then
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Length of output: 85


146-146: Ensure the license link is correct.

Verification successful

The verification script confirms that the LICENSE-AGPL.md file exists in the repository. This aligns with the README.md file's reference to the license link. Therefore, the license link in the README.md is correct as it points to an existing file in the repository.

License Link Verified Successfully

  • The LICENSE-AGPL.md file exists in the repository, confirming the accuracy of the license link in the README.md file.
Scripts Executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Description: Verify the existence of the LICENSE-AGPL.md file.

# Test: Check if the LICENSE-AGPL.md file exists in the repository.
if [ -f "LICENSE-AGPL.md" ]; then
  echo "LICENSE-AGPL.md exists."
else
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fi

Length of output: 85


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Review Status

Actionable comments generated: 0

Configuration used: CodeRabbit UI

Commits Files that changed from the base of the PR and between 5c8abf5 and 7adf721.
Files ignored due to path filters (2)
  • _config.yml is excluded by: !**/*.yml
  • _quarto.yml is excluded by: !**/*.yml
Files selected for processing (9)
  • .github/workflows/quarto-publish.yml (1 hunks)
  • .gitignore (1 hunks)
  • index.qmd (1 hunks)
  • project-management/communication.md (1 hunks)
  • project-management/people.md (1 hunks)
  • project-management/project-report.md (1 hunks)
  • project-management/tools.md (1 hunks)
  • report.md (1 hunks)
  • styles.css (1 hunks)
Files skipped from review due to trivial changes (6)
  • index.qmd
  • project-management/communication.md
  • project-management/project-report.md
  • project-management/tools.md
  • report.md
  • styles.css
Additional comments: 5
project-management/people.md (2)
  • 1-1: LGTM! The replacement of the # TODO comment with an HTML comment improves consistency.
  • 3-3: LGTM! Adding a section header for "People" enhances the document's structure and readability.
.github/workflows/quarto-publish.yml (2)
  • 1-68: LGTM! The workflow is well-structured, covering setup, dependency installation, and publishing to GitHub Pages. It follows best practices for GitHub Actions.
  • 32-78: LGTM! The commented-out sections for additional setups and publishing targets provide useful documentation for potential future enhancements.
.gitignore (1)
  • 1-2: LGTM! Excluding the .quarto/ directory aligns with best practices for using Quarto and maintaining a clean repository.

@maehr
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maehr commented Feb 12, 2024

@coderabbitai help me to enhance the documentation (README.md etc.)

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coderabbitai bot commented Feb 12, 2024

@maehr, based on the current content of the README.md and other documentation files, here are some suggestions to enhance the documentation in light of the new Quarto integration and publishing capabilities introduced in your PR:

README.md Enhancements

  1. Quarto Integration Section: Add a new section that explains the integration of Quarto, including its purpose and how it enhances the project's publishing capabilities. Mention the new GitHub workflow quarto-publish.yml and its role in publishing content to various platforms.

  2. Installation and Setup: Update the installation section to include steps for setting up Quarto, if necessary, for contributors or users who want to generate or publish the documentation locally.

  3. Usage Section: Expand the usage section to include instructions on how to use Quarto for rendering and publishing content. This could include commands to generate the site locally for preview before publishing.

  4. Contributing Section: Update the contributing guidelines to include information on how contributors can add or update content that will be published using Quarto. Mention any specific formatting or file naming conventions that need to be followed.

  5. Project Management Documentation: Briefly mention the updates made to the project-management documentation files (communication.md, people.md, project-report.md, tools.md) and how these documents fit into the overall project management and documentation strategy.

Project Management Documentation Enhancements

Given that the project-management documentation files currently contain placeholder content (Lorem ipsum...), consider the following enhancements:

  1. Real Content: Replace the placeholder content with real information about the project's communication strategies, team members, project reporting, and tools used. This will make the documentation more useful and informative for contributors and users.

  2. Quarto Publishing Details: If any of these documents are intended to be published or rendered using Quarto, include instructions or guidelines on how this will be done. This could involve specifying which documents are published to which platforms and any special considerations for formatting or content inclusion.

  3. Linking Between Documents: Ensure there are clear links between the README.md and these project management documents, especially if they provide additional context or details that complement the main README.

By implementing these suggestions, you can enhance the documentation to better reflect the new features and capabilities introduced in your PR, making it easier for users and contributors to understand and engage with the project.

If you need further assistance or specific examples, feel free to ask!

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Scripts executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Read the content of README.md
cat README.md
# Read the content of other documentation files mentioned in the PR summary
cat project-management/communication.md
cat project-management/people.md
cat project-management/project-report.md
cat project-management/tools.md

Length of output: 11435

@maehr maehr mentioned this pull request Feb 12, 2024
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@maehr maehr requested review from koilebeit and mtwente May 2, 2024 20:08
@maehr maehr self-assigned this May 2, 2024
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Actionable comments posted: 0

Out of diff range and nitpick comments (1)
.github/workflows/quarto-publish.yml (1)

22-30: Consider specifying a default Quarto version to ensure consistent builds.

It's generally a good practice to pin specific versions of tools in CI/CD pipelines to avoid unexpected failures due to updates.

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Actionable comments posted: 2

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@maehr maehr requested a review from mtwente May 4, 2024 08:00
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mtwente commented May 4, 2024

I changed way the licenses are stored so that they now show up within the rendered Quarto website (or did you have the raw files like that on purpose?)

@maehr maehr merged commit b1aac62 into main May 6, 2024
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@maehr maehr deleted the quarto branch May 6, 2024 06:12
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2 participants