Migrate to chezmoi (#3)

* Chezmoi everything

* Ignore file, better instructions

* Template zshenv and ignore some stuff

* Adding python venv script

* Adding conda main env

* Adding Brewfile

* Better org

* Use fzf omz plugin and add fd for fzf

* Minor path update

* Remove some tmux commands

* Simplify gitignore

* Adding tree-sitter confi

* Renamed a file

* treesit emacs

* Emacs 28 on eagle and better ignore for linux

* Simplify ccls on other machines

* Spack manager builds for eagle

* rename

* Adding visit host file

* Update conda env

* Better emacs modeline and add anzu

* Emacs fix for GUI mode on osx

* Emacs icons for gui

* Replace deprecated fasd with z.lua, track iterm2 config

* Emacs completing icons only on graphics

* zplug auto install

* p10k and better iterm

* remove fasd

* add zenburn to emacs

* Adding ellis config

* Add a bat config file

* Minor changes to brew

* Larger history

.chezmoi.toml.tmpl

@@ -0,0 +1,3 @@
+[edit]
+    command = "emacs"
+    args = ["-nw"]

.chezmoiignore

@@ -0,0 +1,14 @@
+README.md
+LICENSE.md
+conda-env
+
+{{- if ne .chezmoi.os "darwin" }}
+.config/karabiner
+.config/iterm2
+.vscode
+Library
+{{- end }}
+
+{{- if ne .chezmoi.os "linux" }}
+.tree-sitter
+{{- end }}

.chezmoitemplates/tree-sitter-config.json

@@ -0,0 +1,54 @@
+{
+  "parser-directories": [
+    "{{ .chezmoi.homeDir }}/tree-sitter-language-src"
+  ],
+  "theme": {
+    "punctuation.bracket": 239,
+    "variable.parameter": {
+      "underline": true
+    },
+    "string": 28,
+    "module": 136,
+    "keyword": 56,
+    "constant": 94,
+    "variable.builtin": {
+      "bold": true
+    },
+    "attribute": {
+      "color": 124,
+      "italic": true
+    },
+    "function": 26,
+    "constructor": 136,
+    "operator": {
+      "bold": true,
+      "color": 239
+    },
+    "string.special": 30,
+    "function.builtin": {
+      "color": 26,
+      "bold": true
+    },
+    "punctuation.delimiter": 239,
+    "tag": 18,
+    "embedded": null,
+    "type.builtin": {
+      "bold": true,
+      "color": 23
+    },
+    "type": 23,
+    "constant.builtin": {
+      "bold": true,
+      "color": 94
+    },
+    "number": {
+      "color": 94,
+      "bold": true
+    },
+    "comment": {
+      "color": 245,
+      "italic": true
+    },
+    "property": 124
+  }
+}

.gitignore

@@ -1,50 +1 @@
-.DS_Store
-.venv
-
-*.pyc
-Pipfile.lock
-
-# beets
-*/.config/beets/state.pickle
-
-# irony
-bin/bin/irony-server
-
-# emacs files and folders
-*/.emacs.d/.dap-breakpoints
-*/.emacs.d/.extension/
-*/.emacs.d/.last-package-update-day
-*/.emacs.d/.lsp-session-v1
-*/.emacs.d/abbrev_defs
-*/.emacs.d/auto-save-list/
-*/.emacs.d/backups/
-*/.emacs.d/elpa/
-*/.emacs.d/elpy/
-*/.emacs.d/emms/cache
-*/.emacs.d/emms/history
-*/.emacs.d/emms/scores
-*/.emacs.d/history
-*/.emacs.d/irony/
-*/.emacs.d/network-security.data
-*/.emacs.d/projectile-bookmarks.eld
-*/.emacs.d/projectile.cache
-*/.emacs.d/recentf
-*/.emacs.d/srecode-map.el
-*/.emacs.d/tramp
-*/.emacs.d/transient/
-*/.emacs.d/tree-sitter/
-*/.emacs.d/eln-cache/
-*/.emacs.d/var
-*/.emacs.d/projects
-
-# vscode
-vscode/.vscode/extensions/llvm-org.lldb-vscode-0.1.0/bin
-vscode/.vscode/extensions/llvm-org.lldb-vscode-0.1.0/lib
-vscode/.vscode/extensions/llvm-org.lldb-vscode-0.1.0/node_modules
-vscode/.vscode/extensions/llvm-org.lldb-vscode-0.1.0/package*.json
-
-# karabiner
-karabiner/.config/karabiner/automatic_backups/
-
-# emacs
-emacs/emacs.d-bkp/
+.DS_Store

README.md

@@ -1,17 +1,24 @@
 Dotfiles
 ========
 
-This repository includes all of my custom dotfiles. The setup scripts
-symlinks the new dotfiles to those in the `~/dotfiles`.
+This repository includes all of my custom dotfiles.
 
 Installation
 ------------
 
-Prerequisites: `GNU stow`, `zsh`, [`oh-my-zsh`](https://github.com/robbyrussell/oh-my-zsh), and [`fzf`](https://github.com/junegunn/fzf)
+Prerequisites for installation are [`chezmoi`](https://www.chezmoi.io).
 
 Then you can do the following:
 ``` bash
-git clone [email protected]:marchdf/dotfiles.git ${HOME}/dotfiles
-cd ~/dotfiles
-./install.sh
+chezmoi init [email protected]:marchdf/dotfiles.git
+chezmoi diff
+chezmoi apply -v
 ```
+
+Improved experience
+-------------------
+
+The following will lead to an improved experience:
+- `zsh`
+- [`oh-my-zsh`](https://github.com/robbyrussell/oh-my-zsh)
+- [`fzf`](https://github.com/junegunn/fzf)

mymainconda.yml → conda-env/environment.yml

@@ -1,25 +1,21 @@
 # Configuring:
 # install miniconda
 # conda config --set ssl_verify false
-# conda env create -f mymainconda.yml
+# conda env create -f environment.yml
 name: main
 channels:
   - conda-forge
   - defaults
 dependencies:
-  - python=3.8
+  - python=3.10
   - black
-  - h5py
   - ipython
   - line_profiler
   - matplotlib
   - mpi4py
   - netcdf4
-  - nose
-  - numba
   - numpy
   - pandas
-  - pip
   - pyyaml
   - scikit-learn
   - scipy
@@ -29,4 +25,3 @@ dependencies:
   - toml
   - yt
 prefix: /home/mhenryde/miniconda3/envs/main
-

dot_config/bat/config

@@ -0,0 +1,25 @@
+# This is `bat`s configuration file. Each line either contains a comment or
+# a command-line option that you want to pass to `bat` by default. You can
+# run `bat --help` to get a list of all possible configuration options.
+
+# Specify desired highlighting theme (e.g. "TwoDark"). Run `bat --list-themes`
+# for a list of all available themes
+--theme="OneHalfDark"
+
+# Enable this to use italic text on the terminal. This is not supported on all
+# terminal emulators (like tmux, by default):
+#--italic-text=always
+
+# Uncomment the following line to disable automatic paging:
+#--paging=never
+
+# Uncomment the following line if you are using less version >= 551 and want to
+# enable mouse scrolling support in `bat` when running inside tmux. This might
+# disable text selection, unless you press shift.
+#--pager="less --RAW-CONTROL-CHARS --quit-if-one-screen --mouse"
+
+# Syntax mappings: map a certain filename pattern to a language.
+#   Example 1: use the C++ syntax for Arduino .ino files
+#   Example 2: Use ".gitignore"-style highlighting for ".ignore" files
+#--map-syntax "*.ino:C++"
+#--map-syntax ".ignore:Git Ignore"