`PhononMaker` add options to `calculate_pdos` and save force constants to file #5019

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Run time

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Job	Run time
docs	12m 33s
test-notebooks-and-ase (3.10)	3m 9s
test-non-ase (3.10, 1)	8m 56s
test-notebooks-and-ase (3.11)	2m 55s
lint	25s
test-non-ase (3.10, 2)	10m 45s
test-notebooks-and-ase (3.12)	2m 11s
test-non-ase (3.10, 3)	10m 45s
test-non-ase (3.11, 1)	8m 19s
test-non-ase (3.11, 2)	10m 3s
test-non-ase (3.11, 3)	10m 26s
test-non-ase (3.12, 1)	8m 56s
test-non-ase (3.12, 2)	11m 10s
test-non-ase (3.12, 3)	11m 11s
automerge	6s
	1h 51m 50s