[WIP] Fix bump phonopy #5033

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Job	Run time
lint	48s
docs	12m 25s
test-notebooks-and-ase (3.10)	3m 15s
test-non-ase (3.10, 1)	8m 53s
test-notebooks-and-ase (3.11)	2m 26s
test-non-ase (3.10, 2)	10m 12s
test-non-ase (3.10, 3)	10m 16s
test-notebooks-and-ase (3.12)	1m 49s
test-non-ase (3.11, 1)	8m 16s
test-non-ase (3.11, 2)	9m 58s
test-non-ase (3.11, 3)	9m 56s
test-non-ase (3.12, 1)	8m 59s
test-non-ase (3.12, 2)	10m 10s
test-non-ase (3.12, 3)	10m 10s
automerge	0s
	1h 47m 33s