README.md

Birth-Death & Coalescent Trees in C++

This repository contains code necessary to simulate phylogenetic trees in C++ with newick string output under a variety of node time models. This will be useful for simulation studies as well as model adequacy assessments.

NOTE: This Repo is under active development

Future improvements include adding functionality to simulate under models such as:

• SI/SIS/SIR trees (and their multi-type extensions).
• "Birth-Death-Shift" Trees