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Birth-Death & Coalescent Trees in C++

This repository contains code necessary to simulate phylogenetic trees in C++ with newick string output under a variety of node time models. This will be useful for simulation studies as well as model adequacy assessments.

NOTE: This Repo is under active development

Future improvements include adding functionality to simulate under models such as:

  • SI/SIS/SIR trees (and their multi-type extensions).
  • "Birth-Death-Shift" Trees

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tree simulators in C++

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