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Adding pkgdown site #18

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Feb 6, 2024
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1 change: 1 addition & 0 deletions .gitignore
Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
.Rproj.user
.DS_Store
my_bed.bed
docs
425 changes: 425 additions & 0 deletions README.html

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6 changes: 6 additions & 0 deletions README.md
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Expand Up @@ -6,3 +6,9 @@ This is biomaesteR, an R package with convenience functions commonly requested i
used in a variety of genomic analysis.

This repo is also an ongoing project intended for demonstrating and following best-practices in development of R packages. This includes adequate package documentation (functions, bundled data objects, etc.), reproducible unit tests and vignettes. Upon Pull Requests, this repo also executes a GitAction workflow where the package is installed in various environments and thorough testing of the complete code base.

## Installation
Open R studio and run the following command to install the development version from GitHub:
```
devtools::install_github("mattssca/BioMaesteR")
```
62 changes: 62 additions & 0 deletions _pkgdown.yml
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title: biomaesteR
url: https://github.com/mattssca/BioMaesteR
template:
bootstrap: 5
theme: breeze-light
home:
sidebar:
structure: [links, license, community, citation, authors, dev]
links:
- text: Source Code
href: https://github.com/mattssca/BioMaesteR
- text: Report A Bug
href: https://github.com/mattssca/BioMaesteR/issues
- text: Insights
href: https://github.com/mattssca/BioMaesteR/pulse
search:
reference:
- title: Bundled Data
desc: Data objects bundlded with the BioMaesteR package.
- contents:
- centromeres_hg38
- centromeres_grch37
- chromosome_arms_hg38
- chromosome_arms_grch37
- cytobands_hg38
- cytobands_grch37
- gene_coordinates_hg38
- gene_coordinates_grch37
- title: Utility
desc: A collection of utility functions.
- contents:
- bin_splitter
- cyto_ranger
- gene_ranger
- region_ranger
- title: Helpers
desc: A collection of helper functions.
- contents:
- get_gene_info
- purify_chr
- purify_regions
- sanity_check_regions
navbar:
type: inverse
left:
- icon: fa-light fa-memo-circle-info
text: "How To"
menu:
- text: Install
href: https://github.com/mattssca/BioMaesteR#installation
- icon: fa-light fa-person-chalkboard
text: "Tutorials"
menu:
- text: Coming Soon...
href: https://github.com/mattssca/BioMaesteR
right:
- icon: fa-file-code-o
text: "Functions Index"
href: reference/index.html
- icon: fa-github fa-lg
text: "github"
href: https://github.com/mattssca/BioMaesteR
119 changes: 119 additions & 0 deletions docs/404.html

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110 changes: 110 additions & 0 deletions docs/LICENSE-text.html

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