PyDamage v0.80

What's Changed

• Increased statistical power: G to A on reverse aligned reads are now also taken into account in damage modelling
• New feature: base quality rescaling: https://pydamage.readthedocs.io/en/0.80/rescaling.html
• Various bug fixes, and performance optimization

Full Changelog: 0.72...0.80

PyDamage v0.72

Changelog:

• Fix the reference column not being written to csv output. Thanks to @rozwalak for reporting it !

PyDamage v0.71

Changelog:

• Add option to filter out reference sequences shorter than threshold with --minlen

PyDamage v0.70

0.70 is 0.7 🤦‍♂️

Changelog

• Remove pypmml dependancy #23
  • The GLM model prediction is now performed in native python
• Fix memory issue when making more than 20 plots 35dc2de
• ski references with 0 aligned reads 2cab44d

PyDamage v0.7

Changelog

• Remove pypmml dependancy #23
  • The GLM model prediction is now performed in native python
• Fix memory issue when making more than 20 plots 35dc2de
• ski references with 0 aligned reads 2cab44d

PyDamage v0.62

Changelog

• Update citation command to PeerJ
• Update documentation

PyDamage v0.61

Changelog

• Fix issue #19
• More flexible exit with warnings if alignment file is empty

PyDamage v0.60

• Adding analyze, filter, and cite subcommand
• Switched accuracy model from statsmodels to PMML imported model from R GLM
• Code refactoring and cleanup
• Documentation update
• addressing various issues

0.50beta

Changelog

• Improved pred_accuracy modelling

Pydamage v0.40

Changelog

• Add prediction accuracy model
• Update docs and README