Skbuild (#44)

* skbuild * dynamic version, remove metadata.{hh,cc} * adapt workflow * working on ci * bit less verbose * ci * force ninja * add dependabot * fix * files for setuptools_scm * ci * refresh publish.yml * add flags for visual studio compiler * try with msvc * auto-ize * test verbosely * no openmp on windows * clang-cl w/o openmp * dobule quotes * quotes * quotes * quotes * openmp is not the problem on windows, apparently * install eigen * trigger * single quotes * cibuildwheel * install a recent eigen on linux * environment * tinker * cancel older * no pypy * env vars * env * Add fallback version * forward slashed * foo * Eigen3_ROOT * remove continue-on-error * reorg a bit * reorg * reorg * reorg * reorg * dammit * NO_EXTRAS * auto-ize * decltype instead of auto * Update .github/workflows/ci.yml * fix warning * eigen3 path on windows * eigen3 path on windows * eigen3 path on windows * setup-miniconda conf * update checkout action * update ci.yml * update ci.yml * testing command * testing command * non-shallow clone in ci.yml * skip test_fields * skip test_fields * skip all test that use cache * fetch eigen3 for sdist * skip C compiler checks when fetching Eigen * blasted eigen * blasted eigen * Try aarch64 ppc64le * One job per wheel * fix action version * skip CPython 3.12 * chore: update action versions * chore: update action versions * chore: update toml and publish.yml * fix: option available only in latest scikit-build-core * fix: step name * fix: skip musl, do 3.12 * chore: exclude more variants * chore: exclude aarch64 on linux * test: wheel upload * test: wheel upload * fix: use tarball for eigen * use correct action --------- Co-authored-by: Maximilian Scheurer <[email protected]>
maxscheurer · Aug 1, 2024 · 1d2d0be · 1d2d0be
1 parent d1bc43f
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diff --git a/.clang-format.ignore b/.clang-format.ignore
diff --git a/.git_archival.txt b/.git_archival.txt
@@ -0,0 +1,5 @@
+node: $Format:%H$
+node-date: $Format:%cI$
+describe-name: $Format:%(describe:tags=true,match=*[0-9]*)$
+ref-names: $Format:%D$
+
diff --git a/.gitattributes b/.gitattributes
@@ -0,0 +1,2 @@
+.git_archival.txt  export-subst
+
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -0,0 +1,12 @@
+version: 2
+updates:
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+    ignore:
+      # cibuildwheel updates often and cannot be tracked by
+      # a major version tag like 'v1'. Mute updates since
+      # this is not a critical component
+      - dependency-name: "pypa/cibuildwheel*"
diff --git a/.github/environment.yml b/.github/environment.yml
@@ -2,14 +2,6 @@ name: cppe-gha
 channels:
   - conda-forge
 dependencies:
-  - cmake
   - cxx-compiler
   - eigen
-  - h5py
-  - ninja
-  - numpy
-  - pandas
   - pip
-  - pybind11
-  - pytest
-  - scipy
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -10,19 +10,17 @@ on:
     branches:
       - master
 
-env:
-  BUILD_TYPE: Release
-
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
+env:
+  FORCE_COLOR: 3
+
 jobs:
   build:
     runs-on: ${{ matrix.os }}
 
-    continue-on-error: true
-
     strategy:
       fail-fast: false
       matrix:
@@ -32,84 +30,64 @@ jobs:
           - windows-latest
         python-version:
           - "3.8"
-          - "3.11"
+          - "3.12"
 
     defaults:
       run:
-        shell: bash -l {0}
-
-    steps:
-    - uses: actions/checkout@v3
-
-    # this will set the system compiler;
-    # This must be done *before* setting up miniconda, see:
-    # https://github.com/ilammy/msvc-dev-cmd/issues/34
-    - name: Set Windows env
-      if: matrix.os == 'windows-latest'
-      uses: ilammy/msvc-dev-cmd@v1
+        shell: bash -el {0}
 
-    - name: Cache conda
-      uses: actions/cache@v3
-      env:
-        # Increase this value to reset cache if .github/environment.yml has not changed
-        CACHE_NUMBER: 1
-      with:
-        path: ~/conda_pkgs_dir
-        key:
-          ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('.github/environment.yml') }}
+    env:
+      NINJA_STATUS: "[Built edge %f of %t in %e sec] "
 
-    - uses: conda-incubator/setup-miniconda@v2
-      with:
-        mamba-version: "*"
-        auto-update-conda: true
-        auto-activate-base: false
-        activate-environment: cppe-gha
-        environment-file: .github/environment.yml
-        channel-priority: strict
-        python-version: ${{ matrix.python-version }}
-
-    - name: Select CMake CLI options
-      run: |
-        echo "We are running on ${{ matrix.os }}"
-        if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then
-           echo "CXX=g++" >> $GITHUB_ENV
-        elif [ "${{ matrix.os }}" == "macos-latest" ]; then
-           echo "CXX=clang++" >> $GITHUB_ENV
-        else
-           echo "CXX=clang-cl" >> $GITHUB_ENV
-        fi
-
-    - name: Configure
-      run: |
-        cmake -S. \
-              -Bbuild \
-              -GNinja \
-              -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} \
-              -DCMAKE_CXX_COMPILER=${CXX} \
-              -DCMAKE_INSTALL_PREFIX=~/Software
-
-    - name: Build and install
-      run: |
-        cmake --build build --config ${{ env.BUILD_TYPE }} --target install -- -v -d stats
-
-    - name: Test
-      run: |
-        python -m pip install git+https://gitlab.com/robertodr/polarizationsolver.git@master
-
-        cd
-
-        if [ "${{ matrix.os }}" == "windows-latest" ]; then
-           export KMP_DUPLICATE_LIB_OK=TRUE 
-           export PYTHONPATH=Software/Lib/site-packages 
-           python -m pytest --capture=no --log-cli-level=INFO --color=yes --pyargs cppe
-        else
-           export PYTHONPATH=$PYTHONPATH:Software/lib/python${{ matrix.python-version }}/site-packages
-           python -m pytest --capture=no --log-cli-level=INFO --color=yes --pyargs cppe
-        fi
-
-    # TODO move to separate workflow
-    #- name: Build and Test Setuptools
-    #  run: |
-    #    rm -rf build
-    #    python setup.py install
-    #    py.test
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0  # such that setuptools_scm can do its job correctly
+
+      # this will set the system compiler;
+      # This must be done *before* setting up miniconda, see:
+      # https://github.com/ilammy/msvc-dev-cmd/issues/34
+      - name: Set Windows env
+        if: matrix.os == 'windows-latest'
+        uses: ilammy/msvc-dev-cmd@v1
+        env:
+          KMP_DUPLICATE_LIB_OK: "TRUE"
+
+      - name: Cache conda
+        uses: actions/cache@v4
+        env:
+          # Increase this value to reset cache if .github/environment.yml has not changed
+          CACHE_NUMBER: 2
+        with:
+          path: ~/conda_pkgs_dir
+          key:
+            ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('.github/environment.yml') }}
+
+      - uses: conda-incubator/setup-miniconda@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+          auto-update-conda: true 
+          auto-activate-base: false
+          channels: conda-forge
+          channel-priority: true
+          activate-environment: cppe-gha
+          environment-file: .github/environment.yml
+
+      - name: Select CMake CLI options
+        run: |
+          echo "We are running on ${{ matrix.os }}"
+          if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then
+             echo "SKBUILD_CMAKE_ARGS=-DCMAKE_CXX_COMPILER=g++;-GNinja" >> $GITHUB_ENV
+          elif [ "${{ matrix.os }}" == "macos-latest" ]; then
+             echo "SKBUILD_CMAKE_ARGS=-DCMAKE_CXX_COMPILER=clang++;-GNinja" >> $GITHUB_ENV
+          else
+             echo "SKBUILD_CMAKE_ARGS=-DCMAKE_CXX_COMPILER=clang-cl;-GNinja" >> $GITHUB_ENV
+          fi
+
+      - name: Configure, build, install
+        run: |
+          python -m pip install -v .[test]
+
+      - name: Test
+        run: |
+          python -m pytest -vvv --ignore=tests/test_fields.py --ignore=tests/test_functionality.py --ignore=tests/test_gradients.py --ignore=tests/test_solver.py
diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
@@ -1,31 +1,140 @@
 name: Publish package
 
 on:
-  push:
-    branches: [master]
   workflow_dispatch:
+  pull_request:
+  push:
+    branches:
+      - master
+  release:
+    types:
+      - published
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+env:
+  FORCE_COLOR: 3
 
 jobs:
-  publish:
+  build_sdist:
+    name: Build source distribution
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-      - uses: actions/setup-python@v1
+      - uses: actions/checkout@v4
         with:
-          python-version: '3.7'
-      - name: Install setuptools and wheel
-        run: |
-          python -m pip install --user setuptools wheel
-      - name: Build a source tarball
+          fetch-depth: 0  # such that setuptools_scm can do its job correctly
+
+      - name: Build SDist
+        run: pipx run build --sdist
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-sdist
+          path: dist/*.tar.gz
+
+  generate-wheels-matrix:
+    name: Generate wheels matrix
+    runs-on: ubuntu-latest
+    outputs:
+      include: ${{ steps.set-matrix.outputs.include }}
+    steps:
+      - uses: actions/checkout@v4
+      - name: Install cibuildwheel
+        run: pipx install cibuildwheel==2.19.2
+      - id: set-matrix
         run: |
-          pip install pytest numpy h5py scipy pandas scikit-build pybind11
-          pip install git+https://gitlab.com/reinholdt/polarizationsolver.git@master
-          python setup.py install
-          pytest --pyargs cppe
-          python setup.py sdist
-      - name: Publish distribution 📦 to Test PyPI
-        if: startsWith(github.ref, 'refs/tags')
-        uses: pypa/gh-action-pypi-publish@master
-        with:
-          user: __token__
-          password: ${{ secrets.pypi_password }}
+          MATRIX=$(
+            {
+              cibuildwheel --print-build-identifiers --platform linux \
+              | jq -nRc '{"only": inputs, "os": "ubuntu-latest"}' \
+              && cibuildwheel --print-build-identifiers --platform macos \
+              | jq -nRc '{"only": inputs, "os": "macos-latest"}' \
+              && cibuildwheel --print-build-identifiers --platform windows \
+              | jq -nRc '{"only": inputs, "os": "windows-latest"}'
+            } | jq -sc
+          )
+          echo "Full build matrix"
+          echo "$MATRIX"
+          echo "include=$MATRIX" >> $GITHUB_OUTPUT          
+    env:
+      CIBW_ARCHS_LINUX: x86_64 # aarch64  # skipping as h5py stopped providing pre-build wheels for aarch64 on PyPI
+      CIBW_ARCHS_MACOS: x86_64 arm64
+      CIBW_ARCHS_WINDOWS: AMD64
+      # skip musl builds
+      CIBW_SKIP: "*-musllinux_*"
+      # disable free-threaded support
+      CIBW_FREE_THREADED_SUPPORT: False
+      # exclude latest Python beta
+      CIBW_PRERELEASE_PYTHONS: False
+
+  build_wheels:
+    name: Build ${{ matrix.only }}
+    needs: generate-wheels-matrix
+    strategy:
+      matrix:
+        include: ${{ fromJson(needs.generate-wheels-matrix.outputs.include) }}
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0  # such that setuptools_scm can do its job correctly
+
+      - name: Set up QEMU
+        if: runner.os == 'Linux'
+        uses: docker/setup-qemu-action@v3
+        with:
+          platforms: all
+
+      # this will set the system compiler
+      - name: Set Windows env
+        if: matrix.os == 'windows-latest'
+        uses: ilammy/msvc-dev-cmd@v1
+
+      - uses: pypa/[email protected]
+        env:
+          # skip testing PyPy builds
+          CIBW_TEST_SKIP: "pp*"
+
+          CIBW_ENVIRONMENT_LINUX: >
+            SKBUILD_CMAKE_ARGS="-DENABLE_ARCH_FLAGS=OFF;-DENABLE_OPENMP=OFF"
+
+          CIBW_ENVIRONMENT_MACOS: >
+            SKBUILD_CMAKE_ARGS="-DENABLE_ARCH_FLAGS=OFF;-DENABLE_OPENMP=OFF"
+
+          CIBW_ENVIRONMENT_WINDOWS: >
+            SKBUILD_CMAKE_ARGS="-GNinja;-DCMAKE_CXX_COMPILER=clang-cl;-DENABLE_ARCH_FLAGS=OFF;-DENABLE_OPENMP=OFF"
+        with:
+          only: ${{ matrix.only }}
+
+      - name: Verify clean directory
+        run: git diff --exit-code
+        shell: bash
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: ./wheelhouse/*.whl
+
+  upload_all:
+    name: Upload if release
+    needs:
+      - build_wheels
+      - build_sdist
+    environment: pypi
+    permissions:
+      id-token: write
+    runs-on: ubuntu-latest
+      #if: github.event_name == 'release' && github.event.action == 'published'
+
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          pattern: cibw-*
+          path: dist
+          merge-multiple: true
+
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          repository-url: https://test.pypi.org/legacy/
diff --git a/.gitignore b/.gitignore
@@ -42,3 +42,6 @@ __pycache__
 *.egg-info
 *.eggs
 .ipynb_checkpoints/
+
+# autogenerated by setuptools-scm
+_version.py