add meta (bioconda#51349)

* add build.sh, meta.yaml and conda_build_config.yaml * Update build.sh * Update conda_build_config.yaml * Update meta.yaml * Update meta.yaml Updated test section with real test example. * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * update meta.yaml and conda_build_config.yaml * Update meta.yaml * Update meta.yaml * update meta.yaml and tested locally passed lint * Update meta.yaml and fix minor error * Update meta.yaml * Update build.sh * Update meta.yaml * Update meta.yaml * update meta.yaml and build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Optimize meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml
mencian · Oct 28, 2024 · 9606978 · 9606978
1 parent 86330ae
commit 9606978
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diff --git a/recipes/meta/build.sh b/recipes/meta/build.sh
@@ -0,0 +1,28 @@
+#!/bin/bash
+
+unset LD LINK ARCH
+export CMAKE_INSTALL_RPATH='$ORIGIN/../lib'
+export CMAKE_BUILD_WITH_INSTALL_RPATH=ON
+
+mkdir -p "$PREFIX/bin"
+mkdir -p "$PREFIX/lib"
+mkdir -p "$PREFIX/share"
+mkdir -p $SRC_DIR/build
+cd $SRC_DIR/build || exit 1
+
+cmake -S $SRC_DIR -B $SRC_DIR/build  \
+    -DCMAKE_BUILD_TYPE=Release \
+    -DCMAKE_INSTALL_PREFIX=$PREFIX \
+    -DCMAKE_CXX_STANDARD=17 \
+    -DCMAKE_MODULE_PATH=$PREFIX/share/cmake \
+    -DCMAKE_PREFIX_PATH=$PREFIX \
+    -DCMAKE_INSTALL_RPATH=$CMAKE_INSTALL_RPATH \
+    -DCMAKE_BUILD_WITH_INSTALL_RPATH=$CMAKE_BUILD_WITH_INSTALL_RPATH
+
+cmake --build . --config Release --parallel ${CPU_COUNT} --verbose || exit 1
+cmake --install . || exit 1
+rm -rf $SRC_DIR/build
+
+# Install MeTA package
+cd ${SRC_DIR} || exit 1
+${PYTHON} -m pip install . --no-deps -vv || exit 1
diff --git a/recipes/meta/meta.yaml b/recipes/meta/meta.yaml
@@ -0,0 +1,80 @@
+{% set name = "meta" %}
+{% set version = "1.0.0" %}
+{% set sha256 = "a35dd5bc3ccffaaf83aa488233467ae85dc5374aea3068c34a6dc85ea29e27a9" %}
+{% set build_variant = "osmesa" if linux else "qt" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/bagari/meta/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  skip: true # [not py39]
+  run_exports:
+    - {{ pin_subpackage('meta', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - cmake
+    - make  # [not win]
+
+  host:
+    - python >=3.9,<3.10
+    - pip
+    - boost =1.82
+    - itk =5.3.0
+    - libitk =5.3.0
+    - libitk-devel =5.3.0
+    - hdf5 >=1.14.2,<1.14.3.0a0
+    - vtk-base >=9.2.6,<9.3.0 build=*{{ build_variant }}*
+    - libexpat >=2.5.0,<2.6.0
+    - vtk-io-ffmpeg >=9.2.6,<9.3.0 build=*{{ build_variant }}*
+
+  run:
+    - qhull
+    - boost =1.82
+    - itk =5.3.0
+    - libitk =5.3.0
+    - libitk-devel =5.3.0
+    - hdf5 >=1.14.2,<1.14.3.0a0
+    - vtk-base >=9.2.6,<9.3.0 build=*{{ build_variant }}*
+    - numpy >=1.21
+    - nibabel
+    - pandas
+    - pyvista
+    - scipy
+    - tqdm
+    - tslearn
+    - dipy
+    - libexpat >=2.5.0,<2.6.0
+    - vtk-io-ffmpeg >=9.2.6,<9.3.0 build=*{{ build_variant }}*
+
+test:
+  source_files:
+    - resources/CST_R.nii.gz
+  imports:
+    - meta
+  commands:
+    - meta --help 2>&1 || exit 1
+    - vtklevelset resources/CST_R.nii.gz CST_R.vtk 0.1 && test -f CST_R.vtk
+    - cmrep_vskel -c 3 -p 1.5 -g CST_R.vtk CST_R_skeleton.vtk && test -f CST_R_skeleton.vtk
+
+about:
+  home: https://github.com/bagari/meta
+  license: BSD-3-Clause
+  license_file: LICENSE.txt
+  summary: 'Medial Tractography Analysis (MeTA)'
+  description: |
+    MeTA is a workflow implemented to minimize microstructural heterogeneity in diffusion MRI (dMRI) metrics by extracting and parcellating the core volume along the bundle length in the voxel-space directly while effectively preserving bundle shape and efficiently capturing the regional variation within and along white matter (WM) bundles.
+  dev_url: https://github.com/bagari/meta
+  doc_url: https://github.com/bagari/meta/wiki
+
+extra:
+  bulk: true
+  recipe-maintainers:
+    - bagari