cd-hit: add osx-arm64 build (bioconda#52061)

mencian · Nov 12, 2024 · dd0d3fa · dd0d3fa
1 parent 6d9b57e
commit dd0d3fa
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diff --git a/recipes/cd-hit/build.sh b/recipes/cd-hit/build.sh
@@ -1,26 +1,28 @@
-#!/bin/sh
+#!/bin/bash
 
-export CFLAGS="-I$PREFIX/include"
-export CPPFLAGS="-I$PREFIX/include"
-export CXXFLAGS="-I$PREFIX/include"
-export LDFLAGS="-L$PREFIX/lib"
+mkdir -p $PREFIX/bin
+
+export CFLAGS="${CFLAGS} -O3"
+export CPPFLAGS="${CPPFLAGS} -I$PREFIX/include"
+export CXXFLAGS="${CXXFLAGS} -O3 -I$PREFIX/include"
+export LDFLAGS="${LDFLAGS} -L$PREFIX/lib"
 export CPATH=${PREFIX}/include
 
 sed -i.bak 's/^CC =$//g' Makefile
 sed -i.bak 's/^#LDFLAGS.*//g' Makefile
-
+rm -rf *.bak
 
 if [[ "$OSTYPE" == "darwin"* ]]; then
   #Lines below is commented out until fix provided for OPENMP support on OS X for this program
 
   CCFLAGS="$CCFLAGS -Wl,-rpath ${PREFIX}/lib -L${PREFIX}/lib -I${PREFIX}/include -fopenmp"
   sed -i.bak 's/CCFLAGS = -fopenmp/CCFLAGS += -fopenmp/g' Makefile
+  rm -rf *.bak
   LDFLAGS="$LDFLAGS -stdlib=libc++"
 
   make CC=$CXX openmp=no MAX_SEQ=1000000
 else
   make CC=$GXX MAX_SEQ=1000000
 fi
-
-mkdir -p $PREFIX/bin 
-make install PREFIX=$PREFIX/bin 
+
+make install PREFIX="$PREFIX/bin"