chore(deps): update ubuntu docker tag to v22.10

metagenomics · Oct 25, 2022 · e00a629 · e00a629
1 parent 07601c4
commit e00a629
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Showing 7 changed files with 8 additions and 8 deletions.
diff --git a/docker/toolkit-bwa-samtools/Dockerfile b/docker/toolkit-bwa-samtools/Dockerfile
@@ -1,6 +1,6 @@
 FROM quay.io/biocontainers/bwa:0.7.17--h5bf99c6_8 AS bwa
 
-FROM ubuntu:20.04
+FROM ubuntu:22.10
 ENV SAMTOOLS=samtools-1.12
 RUN apt update && apt install -y bc libgomp1 libgetopt-complete-perl wget autoconf automake make gcc perl zlib1g-dev libbz2-dev liblzma-dev libcurl4-gnutls-dev libssl-dev libncurses5-dev
 RUN wget -qO- https://github.com/samtools/samtools/releases/download/1.12/samtools-1.12.tar.bz2 | tar jxvf -  &&\

diff --git a/docker/toolkit-checkm/Dockerfile b/docker/toolkit-checkm/Dockerfile
@@ -1,4 +1,4 @@
-FROM ubuntu:18.04
+FROM ubuntu:22.10
 ENV CHECKM_VERSION=1.1.3
 COPY run_checkm.sh /usr/local/bin/
 COPY config_location.patch /root/

diff --git a/docker/toolkit-cmseq/Dockerfile b/docker/toolkit-cmseq/Dockerfile
@@ -1,4 +1,4 @@
-FROM ubuntu:18.04
+FROM ubuntu:22.10
 WORKDIR /usr/local/bin
 ENV LC_ALL=C.UTF-8 
 RUN apt update &&  \

diff --git a/docker/toolkit-mob-suite/Dockerfile b/docker/toolkit-mob-suite/Dockerfile
@@ -1,4 +1,4 @@
-FROM ubuntu:22.04
+FROM ubuntu:22.10
 ENV VERSION=3.1.0
 RUN ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime && \
     apt update && apt install software-properties-common  wget git -y && \

diff --git a/docker/toolkit-prokka/Dockerfile b/docker/toolkit-prokka/Dockerfile
@@ -1,4 +1,4 @@
-FROM ubuntu:18.04
+FROM ubuntu:22.10
 
 # metadata
 LABEL website="https://github.com/tseemann/prokka"

diff --git a/docker/toolkit-sans/Dockerfile b/docker/toolkit-sans/Dockerfile
@@ -1,4 +1,4 @@
-FROM ubuntu:18.04
+FROM ubuntu:22.10
 WORKDIR /sans
 RUN apt update && apt install -y wget g++ git make python3.8 python3-dendropy && \
     git clone https://gitlab.ub.uni-bielefeld.de/gi/sans.git . && \

diff --git a/nextflow.config b/nextflow.config
@@ -42,15 +42,15 @@ params {
 
    publishDirMode = "symlink"
    pysradb_image = "quay.io/biocontainers/pysradb:1.4.1--pyhdfd78af_0"
-   ubuntu_image = "ubuntu:20.04"
+   ubuntu_image = "ubuntu:22.10"
    minimap2_image= "quay.io/biocontainers/minimap2:2.24--h7132678_1"
    metaflye_image = "quay.io/biocontainers/flye:2.9--py36h7281c5b_1"
    metacoag_image = "metagenomics/toolkit-metacoag:1.0.0-0"
    porechop_image = "quay.io/biocontainers/porechop:0.2.4--py39hc16433a_3"
    bandage_image = "quay.io/biocontainers/bandage:0.8.1--hc9558a2_2"
    nonpareil_image = "quay.io/biocontainers/nonpareil:3.4.1--r41h9f5acd7_1"
    jellyfish_image = "quay.io/biocontainers/kmer-jellyfish:2.3.0--h7d875b9_2"
-   ubuntu_image = "ubuntu:20.04"
+   ubuntu_image = "ubuntu:22.10"
    carveme_image = "carveme"
    cobra_image = "quay.io/biocontainers/cobra:0.21.0--pyh5e36f6f_1"
    memote_image = "opencobra/memote:0.13.0"