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Feature/nf secrets #343
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Merged
Feature/nf secrets #343
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bosterholz
approved these changes
Jan 18, 2024
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Great, thanks!
example_params/fullPipelineSRAQC.yml
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@@ -1,5 +1,7 @@ | |||
tempdir: "tmp" | |||
summary: false | |||
s3SignIn: true | |||
s3SignIn: true |
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Double?
Co-authored-by: bosterholz <[email protected]>
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This PR enabled the use of Nextflows secrets feature. Instead of using one secrets mechanism in the aws.confg and a different one for s5cmd, it is now possible to set secrets uniformly.
Example:
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