Function to run NMTRAN on a model #100
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| - 'scratch/**' | |
| tags: | |
| - '[0-9]+.[0-9]+.[0-9]+' | |
| - '[0-9]+.[0-9]+.[0-9]+.[0-9]+' | |
| pull_request: | |
| env: | |
| BBI_VERSION: v3.3.0 | |
| jobs: | |
| check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} R ${{ matrix.config.r }} ${{ matrix.config.label }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - os: ubuntu-20.04 | |
| r: 4.2.3 | |
| - os: ubuntu-20.04 | |
| r: 4.3.1 | |
| - os: ubuntu-latest | |
| r: release | |
| - label: oldest | |
| os: ubuntu-20.04 | |
| r: 4.0.5 | |
| bbi_version: v3.0.2 | |
| mpn: 2023-01-25 | |
| cran_override: 'https://mpn.metworx.com/snapshots/stable/2023-01-25' | |
| rspm: 'https://packagemanager.posit.co/cran/__linux__/focal/2023-01-25' | |
| env: | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install bbi | |
| uses: metrumresearchgroup/actions/setup-bbi@v1 | |
| with: | |
| version: ${{ matrix.config.bbi_version || env.BBI_VERSION }} | |
| - uses: metrumresearchgroup/actions/mpn-latest@v1 | |
| if: matrix.config.label != 'oldest' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| extra-repositories: 'https://mpn.metworx.com/snapshots/stable/${{ matrix.config.mpn || env.MPN_LATEST }}' | |
| env: | |
| RSPM: ${{ matrix.config.rspm }} | |
| CRAN: ${{ matrix.config.cran_override }} | |
| - name: Check out mrgmisc | |
| if: matrix.config.label == 'oldest' | |
| shell: bash | |
| run: | | |
| version=0.1.0 | |
| tdir=$(mktemp -d) | |
| git clone --branch "$version" --depth 1 \ | |
| https://github.com/metrumresearchgroup/mrgmisc.git "$tdir" | |
| echo "MRGMISC_PKG=local::$tdir" >>$GITHUB_ENV | |
| - name: Check out nmrec | |
| if: matrix.config.label == 'oldest' | |
| shell: bash | |
| run: | | |
| # Even on oldest, install new enough nmrec for vignettes to | |
| # build. | |
| version=0.4.0 | |
| tdir=$(mktemp -d) | |
| git clone --branch "$version" --depth 1 \ | |
| https://github.com/metrumresearchgroup/nmrec.git "$tdir" | |
| echo "NMREC_PKG=local::$tdir" >>$GITHUB_ENV | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::pkgdown | |
| any::rcmdcheck | |
| ${{ env.MRGMISC_PKG }} | |
| ${{ env.NMREC_PKG }} | |
| upgrade: ${{ matrix.config.label == 'oldest' && 'FALSE' || 'TRUE' }} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| - name: Check pkgdown | |
| shell: Rscript {0} | |
| run: pkgdown::check_pkgdown() | |
| release: | |
| if: github.ref_type == 'tag' | |
| name: Upload release | |
| needs: check | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| contents: read | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install bbi | |
| uses: metrumresearchgroup/actions/setup-bbi@v1 | |
| with: | |
| version: ${{ env.BBI_VERSION }} | |
| - uses: metrumresearchgroup/actions/mpn-latest@v1 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: release | |
| use-public-rspm: true | |
| extra-repositories: 'https://mpn.metworx.com/snapshots/stable/${{ env.MPN_LATEST }}' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgpub | |
| - uses: metrumresearchgroup/actions/publish-r-release@v1 |