Merge pull request #61 from metrumresearchgroup/release/0.3.5

Release/0.3.5
metrumresearchgroup · May 13, 2022 · 1680759 · 1680759
2 parents 2c457e3 + 48fce37
commit 1680759
Show file tree

Hide file tree

Showing 37 changed files with 1,196 additions and 376 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -8,6 +8,7 @@ inst/exdata/run102.RDS
 Makefile
 inst/img
 inst/examples/img
+inst/examples/pmplots_complete\.html
 ^.*\.Rproj$
 ^\.Rproj\.user$
 ^docs$
@@ -16,3 +17,4 @@ inst/examples/img
 _pkgdown\.yml
 vignettes/complete\.Rmd
 vignettes/*\.pdf
+inst/examples/*\.html
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: pmplots
 Type: Package
 Title: Plots for Pharmacometrics
-Version: 0.3.4
+Version: 0.3.5
 Authors@R: c(
        person("Kyle T", "Baron", "", "[email protected]", c("aut", "cre")),
        person("Metrum Research Group", role =  c("cph"))
@@ -20,7 +20,6 @@ Imports:
   glue (>= 1.5.0), 
   assertthat, 
   tidyr (>= 1.1.4), 
-  purrr (>= 0.3.4),
   forcats (>= 0.5.1), 
   lifecycle, 
   tidyselect (>= 1.1.1)

diff --git a/Makefile b/Makefile
@@ -5,6 +5,9 @@ TARBALL=${PACKAGE}_${VERSION}.tar.gz
 PKGDIR=.
 CHKDIR=.
 
+testn:
+	Rscript inst/validation/latest.R
+
 drone:
 	R CMD build --no-build-vignettes --md5
 	R CMD check ${TARBALL}

diff --git a/NAMESPACE b/NAMESPACE
@@ -178,7 +178,10 @@ importFrom(ggplot2,margin)
 importFrom(ggplot2,position_jitter)
 importFrom(ggplot2,rel)
 importFrom(ggplot2,scale_color_brewer)
+importFrom(ggplot2,scale_color_manual)
+importFrom(ggplot2,scale_linetype_manual)
 importFrom(ggplot2,scale_shape_discrete)
+importFrom(ggplot2,scale_shape_manual)
 importFrom(ggplot2,scale_x_continuous)
 importFrom(ggplot2,scale_y_log10)
 importFrom(ggplot2,stat_qq)
@@ -187,12 +190,14 @@ importFrom(ggplot2,theme_bw)
 importFrom(ggplot2,theme_set)
 importFrom(ggplot2,waiver)
 importFrom(glue,glue)
+importFrom(glue,glue_data)
 importFrom(grDevices,dev.off)
 importFrom(grDevices,pdf)
 importFrom(lifecycle,deprecate_warn)
 importFrom(lifecycle,deprecated)
 importFrom(lifecycle,is_present)
 importFrom(rlang,as_list)
+importFrom(rlang,is_named)
 importFrom(rlang,quo_name)
 importFrom(rlang,quo_text)
 importFrom(rlang,quos)

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,15 @@
+# pmplots 0.3.5
+
+- Functions generating default axis titles now have arguments so that 
+  interpolated customizations can happen when calling the function outside
+  of a plot context (#57).
+
+- `dv_pred_ipred()` heavily refactored for functionality and style; see the 
+  PR for significant changes / improvements (#54).
+
+- Put stories in yaml format; add script to build validation docs from the
+  yaml file (#58, #59).
+
 # pmplots 0.3.4
 
 - `pm_grid()` now uses 'patchwork' to arrange plots; 'patchwork' becomes

diff --git a/R/Aaaa.R b/R/Aaaa.R
@@ -12,9 +12,11 @@
 #' @importFrom ggplot2 element_text labs aes waiver rel
 #' @importFrom ggplot2 scale_shape_discrete scale_x_continuous scale_y_log10
 #' @importFrom ggplot2 geom_text position_jitter label_value
+#' @importFrom ggplot2 scale_color_manual scale_linetype_manual
+#' @importFrom ggplot2 scale_shape_manual
 #' @importFrom stats as.formula qnorm quantile cor dnorm
-#' @importFrom rlang sym quo_text quos set_names quo_name as_list
-#' @importFrom glue glue
+#' @importFrom rlang sym quo_text quos set_names quo_name as_list is_named
+#' @importFrom glue glue glue_data
 #' @importFrom assertthat assert_that
 #' @importFrom tidyr pivot_longer
 #' @importFrom forcats fct_inorder