Updated ORM classes.

Updated ORM classes by ingesting changes for the
'sample' table from the prod. database. Added a
class for the 'aliqoute' table.

Changes

@@ -3,6 +3,8 @@ LIST OF CHANGES
 
  - Fix perlbrew installation by installing libdevel-patchperl-perl in
    GitHub runner.
+ - Updated ORM classes by ingesting changes for the 'sample' table from the
+   production database. Added a class for the 'aliqoute' table.
 
 release 6.34.0 (2024-10-24)
  - Added new delegated methods to WTSI::DNAP::Warehouse::Schema::Result::IseqFlowcell,

MANIFEST

@@ -4,6 +4,7 @@ lib/WTSI/DNAP/Warehouse/Schema.pm
 lib/WTSI/DNAP/Warehouse/Schema/Query/IseqFlowcell.pm
 lib/WTSI/DNAP/Warehouse/Schema/Query/LibraryDigest.pm
 lib/WTSI/DNAP/Warehouse/Schema/Query/LimsFlags.pm
+lib/WTSI/DNAP/Warehouse/Schema/Result/Aliquot.pm
 lib/WTSI/DNAP/Warehouse/Schema/Result/CgapAnalyte.pm
 lib/WTSI/DNAP/Warehouse/Schema/Result/CgapBiomaterial.pm
 lib/WTSI/DNAP/Warehouse/Schema/Result/CgapHeron.pm

lib/WTSI/DNAP/Warehouse/Schema/Result/Aliquot.pm

@@ -0,0 +1,288 @@
+
+package WTSI::DNAP::Warehouse::Schema::Result::Aliquot;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+=head1 NAME
+
+WTSI::DNAP::Warehouse::Schema::Result::Aliquot
+
+=cut
+
+use strict;
+use warnings;
+
+use Moose;
+use MooseX::NonMoose;
+use MooseX::MarkAsMethods autoclean => 1;
+extends 'DBIx::Class::Core';
+
+=head1 COMPONENTS LOADED
+
+=over 4
+
+=item * L<DBIx::Class::InflateColumn::DateTime>
+
+=back
+
+=cut
+
+__PACKAGE__->load_components('InflateColumn::DateTime');
+
+=head1 TABLE: C<aliquot>
+
+=cut
+
+__PACKAGE__->table('aliquot');
+
+=head1 ACCESSORS
+
+=head2 id
+
+  data_type: 'bigint'
+  is_auto_increment: 1
+  is_nullable: 0
+
+=head2 id_lims
+
+  data_type: 'varchar'
+  is_nullable: 0
+  size: 255
+
+The LIMS system that the aliquot was created in
+
+=head2 aliquot_uuid
+
+  data_type: 'varchar'
+  is_nullable: 0
+  size: 255
+
+The UUID of the aliquot in the LIMS system
+
+=head2 aliquot_type
+
+  data_type: 'varchar'
+  is_nullable: 0
+  size: 255
+
+The type of the aliquot
+
+=head2 source_type
+
+  data_type: 'varchar'
+  is_nullable: 0
+  size: 255
+
+The type of the source of the aliquot
+
+=head2 source_barcode
+
+  data_type: 'varchar'
+  is_nullable: 0
+  size: 255
+
+The barcode of the source of the aliquot
+
+=head2 sample_name
+
+  data_type: 'varchar'
+  is_nullable: 0
+  size: 255
+
+The name of the sample that the aliquot was created from
+
+=head2 used_by_type
+
+  data_type: 'varchar'
+  is_nullable: 0
+  size: 255
+
+The type of the entity that the aliquot is used by
+
+=head2 used_by_barcode
+
+  data_type: 'varchar'
+  is_nullable: 0
+  size: 255
+
+The barcode of the entity that the aliquot is used by
+
+=head2 volume
+
+  data_type: 'decimal'
+  is_nullable: 0
+  size: [10,2]
+
+The volume of the aliquot (uL)
+
+=head2 concentration
+
+  data_type: 'decimal'
+  is_nullable: 1
+  size: [10,2]
+
+The concentration of the aliquot (ng/ul)
+
+=head2 last_updated
+
+  data_type: 'datetime'
+  datetime_undef_if_invalid: 1
+  is_nullable: 0
+
+The date and time that the aliquot was last updated
+
+=head2 recorded_at
+
+  data_type: 'datetime'
+  datetime_undef_if_invalid: 1
+  is_nullable: 0
+
+The date and time that the aliquot was recorded
+
+=head2 created_at
+
+  data_type: 'datetime'
+  datetime_undef_if_invalid: 1
+  is_nullable: 0
+
+The date and time that this record was created
+
+=head2 insert_size
+
+  data_type: 'integer'
+  is_nullable: 1
+
+The size of the insert in base pairs
+
+=cut
+
+__PACKAGE__->add_columns(
+  'id',
+  { data_type => 'bigint', is_auto_increment => 1, is_nullable => 0 },
+  'id_lims',
+  { data_type => 'varchar', is_nullable => 0, size => 255 },
+  'aliquot_uuid',
+  { data_type => 'varchar', is_nullable => 0, size => 255 },
+  'aliquot_type',
+  { data_type => 'varchar', is_nullable => 0, size => 255 },
+  'source_type',
+  { data_type => 'varchar', is_nullable => 0, size => 255 },
+  'source_barcode',
+  { data_type => 'varchar', is_nullable => 0, size => 255 },
+  'sample_name',
+  { data_type => 'varchar', is_nullable => 0, size => 255 },
+  'used_by_type',
+  { data_type => 'varchar', is_nullable => 0, size => 255 },
+  'used_by_barcode',
+  { data_type => 'varchar', is_nullable => 0, size => 255 },
+  'volume',
+  { data_type => 'decimal', is_nullable => 0, size => [10, 2] },
+  'concentration',
+  { data_type => 'decimal', is_nullable => 1, size => [10, 2] },
+  'last_updated',
+  {
+    data_type => 'datetime',
+    datetime_undef_if_invalid => 1,
+    is_nullable => 0,
+  },
+  'recorded_at',
+  {
+    data_type => 'datetime',
+    datetime_undef_if_invalid => 1,
+    is_nullable => 0,
+  },
+  'created_at',
+  {
+    data_type => 'datetime',
+    datetime_undef_if_invalid => 1,
+    is_nullable => 0,
+  },
+  'insert_size',
+  { data_type => 'integer', is_nullable => 1 },
+);
+
+=head1 PRIMARY KEY
+
+=over 4
+
+=item * L</id>
+
+=back
+
+=cut
+
+__PACKAGE__->set_primary_key('id');
+
+
+# Created by DBIx::Class::Schema::Loader v0.07052 @ 2024-12-18 10:40:33
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:THzPpPHEAv/8hWXfw77wsw
+
+our $VERSION = '0';
+
+__PACKAGE__->meta->make_immutable;
+
+1;
+
+__END__
+
+=head1 SYNOPSIS
+
+=head1 DESCRIPTION
+
+Result class definition in DBIx binding for the multi-lims warehouse database.
+
+=head1 DIAGNOSTICS
+
+=head1 CONFIGURATION AND ENVIRONMENT
+
+=head1 SUBROUTINES/METHODS
+
+=head1 DEPENDENCIES
+
+=over
+
+=item strict
+
+=item warnings
+
+=item Moose
+
+=item MooseX::NonMoose
+
+=item MooseX::MarkAsMethods
+
+=item DBIx::Class::Core
+
+=item DBIx::Class::InflateColumn::DateTime
+
+=back
+
+=head1 INCOMPATIBILITIES
+
+=head1 BUGS AND LIMITATIONS
+
+=head1 AUTHOR
+
+Marina Gourtovaia E<lt>[email protected]E<gt>
+
+=head1 LICENSE AND COPYRIGHT
+
+Copyright (C) 2024 Genome Research Ltd.
+
+This file is part of the ml_warehouse package L<https://github.com/wtsi-npg/ml_warehouse>.
+
+NPG is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+=cut

lib/WTSI/DNAP/Warehouse/Schema/Result/Sample.pm

@@ -58,7 +58,7 @@ LIM system identifier, e.g. CLARITY-GCLP, SEQSCAPE
 =head2 uuid_sample_lims
 
   data_type: 'varchar'
-  is_nullable: 1
+  is_nullable: 0
   size: 36
 
 LIMS-specific sample uuid
@@ -457,7 +457,7 @@ __PACKAGE__->add_columns(
   'id_lims',
   { data_type => 'varchar', is_nullable => 0, size => 10 },
   'uuid_sample_lims',
-  { data_type => 'varchar', is_nullable => 1, size => 36 },
+  { data_type => 'varchar', is_nullable => 0, size => 36 },
   'id_sample_lims',
   { data_type => 'varchar', is_nullable => 0, size => 255 },
   'last_updated',
@@ -616,6 +616,23 @@ __PACKAGE__->set_primary_key('id_sample_tmp');
 
 =head1 UNIQUE CONSTRAINTS
 
+=head2 C<index_sample_on_id_lims_and_id_sample_lims>
+
+=over 4
+
+=item * L</id_lims>
+
+=item * L</id_sample_lims>
+
+=back
+
+=cut
+
+__PACKAGE__->add_unique_constraint(
+  'index_sample_on_id_lims_and_id_sample_lims',
+  ['id_lims', 'id_sample_lims'],
+);
+
 =head2 C<index_sample_on_id_sample_lims_and_id_lims>
 
 =over 4
@@ -798,8 +815,8 @@ __PACKAGE__->has_many(
 );
 
 
-# Created by DBIx::Class::Schema::Loader v0.07052 @ 2024-10-09 15:42:26
-# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:S5eGEf8q9fTn5qKSp/Et/g
+# Created by DBIx::Class::Schema::Loader v0.07052 @ 2024-12-18 10:40:33
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:T/2l001x2GOs91EGZSjK8A
 
 our $VERSION = '0';