added spaces to egrep command in staging

microbiomedata · Jun 30, 2023 · ea9e609 · ea9e609
1 parent 5943f2d
commit ea9e609
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/interleave_rqcfilter.wdl b/interleave_rqcfilter.wdl
@@ -62,7 +62,7 @@ task stage {
 
    command <<<
        set -e
-       if [ $( echo ${input_fastq1}|egrep -c "https*:") -gt 0 ] ; then
+       if [ $( echo ${input_fastq1} | egrep -c "https*:") -gt 0 ] ; then
            wget ${input_fastq1} -O ${target_reads_1}
            wget ${input_fastq2} -O ${target_reads_2}
        else