40 re id logic for metatranscriptomes

[mbthornton-lbl]

This PR adds logic to re_id_tools to extract and process Metatranscriptome activity records and their associated data objects.

Metatranscriptome logic includes:

• Activity definition in workflow YAML
• A new update method for metatranscriptome in base
• Update to extract-records to extract metatranscriptome
• Update to test data to include extracted metatranscriptome and data objects
• dryrun results and log

Additionally, this PR provides the following refactorings:

• add prototype nmdc-common.client package (this will eventually be it's own pkg)
• refactor queries to rely on GET based api calls from nmdc-common.client
• Dry up file_utils and add type hints

[Michal-Babins]

Addresses all changes needed to update metaT records. Changes in YAML, addition of creation of workflow object, as well as refactoring to other parts of the script.