[python-package] fix mypy errors in Dataset construction #7388
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: R-package | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
branches: | |
- master | |
- release/* | |
# automatically cancel in-progress builds if another commit is pushed | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
env: | |
# hack to get around this: | |
# https://stat.ethz.ch/pipermail/r-package-devel/2020q3/005930.html | |
_R_CHECK_SYSTEM_CLOCK_: 0 | |
# ignore R CMD CHECK NOTE checking how long it has | |
# been since the last submission | |
_R_CHECK_CRAN_INCOMING_REMOTE_: 0 | |
# CRAN ignores the "installed size is too large" NOTE, | |
# so our CI can too. Setting to a large value here just | |
# to catch extreme problems | |
_R_CHECK_PKG_SIZES_THRESHOLD_: 100 | |
jobs: | |
test: | |
name: ${{ matrix.task }} (${{ matrix.os }}, ${{ matrix.compiler }}, R ${{ matrix.r_version }}, ${{ matrix.build_type }}) | |
runs-on: ${{ matrix.os }} | |
container: ${{ matrix.container }} | |
timeout-minutes: 60 | |
strategy: | |
fail-fast: false | |
matrix: | |
include: | |
################ | |
# CMake builds # | |
################ | |
- os: ubuntu-latest | |
task: r-package | |
compiler: gcc | |
r_version: 3.6 | |
build_type: cmake | |
container: 'ubuntu:18.04' | |
- os: ubuntu-latest | |
task: r-package | |
compiler: gcc | |
r_version: 4.3 | |
build_type: cmake | |
container: 'ubuntu:22.04' | |
- os: ubuntu-latest | |
task: r-package | |
compiler: clang | |
r_version: 3.6 | |
build_type: cmake | |
container: 'ubuntu:18.04' | |
- os: ubuntu-latest | |
task: r-package | |
compiler: clang | |
r_version: 4.3 | |
build_type: cmake | |
container: 'ubuntu:22.04' | |
- os: macOS-latest | |
task: r-package | |
compiler: gcc | |
r_version: 4.3 | |
build_type: cmake | |
container: null | |
- os: macOS-latest | |
task: r-package | |
compiler: clang | |
r_version: 4.3 | |
build_type: cmake | |
container: null | |
- os: windows-latest | |
task: r-package | |
compiler: MINGW | |
toolchain: MINGW | |
r_version: 3.6 | |
build_type: cmake | |
container: null | |
- os: windows-latest | |
task: r-package | |
compiler: MINGW | |
toolchain: MSYS | |
r_version: 4.2 | |
build_type: cmake | |
container: null | |
# Visual Studio 2019 | |
- os: windows-2019 | |
task: r-package | |
compiler: MSVC | |
toolchain: MSVC | |
r_version: 3.6 | |
build_type: cmake | |
container: null | |
# Visual Studio 2022 | |
- os: windows-2022 | |
task: r-package | |
compiler: MSVC | |
toolchain: MSVC | |
r_version: 4.2 | |
build_type: cmake | |
container: null | |
############### | |
# CRAN builds # | |
############### | |
- os: windows-latest | |
task: r-package | |
compiler: MINGW | |
toolchain: MINGW | |
r_version: 3.6 | |
build_type: cran | |
container: null | |
- os: windows-latest | |
task: r-package | |
compiler: MINGW | |
toolchain: MSYS | |
r_version: 4.2 | |
build_type: cran | |
container: null | |
- os: ubuntu-latest | |
task: r-package | |
compiler: gcc | |
r_version: 4.3 | |
build_type: cran | |
container: 'ubuntu:22.04' | |
- os: macOS-latest | |
task: r-package | |
compiler: clang | |
r_version: 4.3 | |
build_type: cran | |
container: null | |
################ | |
# Other checks # | |
################ | |
- os: ubuntu-latest | |
task: r-rchk | |
compiler: gcc | |
r_version: 4.3 | |
build_type: cran | |
container: 'ubuntu:22.04' | |
steps: | |
- name: Prevent conversion of line endings on Windows | |
if: startsWith(matrix.os, 'windows') | |
shell: pwsh | |
run: git config --global core.autocrlf false | |
- name: Install packages used by third-party actions | |
if: startsWith(matrix.os, 'ubuntu') | |
shell: bash | |
run: | | |
apt-get update -y | |
apt-get install --no-install-recommends -y \ | |
ca-certificates \ | |
dirmngr \ | |
gpg \ | |
gpg-agent \ | |
software-properties-common \ | |
sudo | |
# install newest version of git | |
# ref: | |
# - https://unix.stackexchange.com/a/170831/550004 | |
# - https://git-scm.com/download/linux | |
add-apt-repository ppa:git-core/ppa -y | |
apt-get update -y | |
apt-get install --no-install-recommends -y \ | |
git | |
- name: Trust git cloning LightGBM | |
if: startsWith(matrix.os, 'ubuntu') | |
run: | | |
git config --global --add safe.directory "${GITHUB_WORKSPACE}" | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 5 | |
submodules: true | |
- name: Install pandoc | |
uses: r-lib/actions/setup-pandoc@v2 | |
- name: install tinytex | |
if: startsWith(matrix.os, 'windows') | |
uses: r-lib/actions/setup-tinytex@v2 | |
env: | |
CTAN_MIRROR: https://ctan.math.illinois.edu/systems/win32/miktex | |
TINYTEX_INSTALLER: TinyTeX | |
- name: Setup and run tests on Linux and macOS | |
if: matrix.os == 'macOS-latest' || matrix.os == 'ubuntu-latest' | |
shell: bash | |
run: | | |
export TASK="${{ matrix.task }}" | |
export COMPILER="${{ matrix.compiler }}" | |
export GITHUB_ACTIONS="true" | |
if [[ "${{ matrix.os }}" == "macOS-latest" ]]; then | |
export OS_NAME="macos" | |
elif [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then | |
export OS_NAME="linux" | |
export IN_UBUNTU_BASE_CONTAINER="true" | |
# the default version of cmake provided on Ubuntu 18.04 (v3.10.2), is not supported by LightGBM | |
# see https://github.com/microsoft/LightGBM/issues/5642 | |
if [[ "${{ matrix.container }}" == "ubuntu:18.04" ]]; then | |
export INSTALL_CMAKE_FROM_RELEASES="true" | |
fi | |
fi | |
export BUILD_DIRECTORY="$GITHUB_WORKSPACE" | |
export R_VERSION="${{ matrix.r_version }}" | |
export R_BUILD_TYPE="${{ matrix.build_type }}" | |
$GITHUB_WORKSPACE/.ci/setup.sh | |
$GITHUB_WORKSPACE/.ci/test.sh | |
- name: Setup and run tests on Windows | |
if: startsWith(matrix.os, 'windows') | |
shell: pwsh -command ". {0}" | |
run: | | |
$env:BUILD_SOURCESDIRECTORY = $env:GITHUB_WORKSPACE | |
$env:LGB_VER = (Get-Content -TotalCount 1 $env:BUILD_SOURCESDIRECTORY\VERSION.txt).trim().replace('rc', '-') | |
$env:TOOLCHAIN = "${{ matrix.toolchain }}" | |
$env:R_VERSION = "${{ matrix.r_version }}" | |
$env:R_BUILD_TYPE = "${{ matrix.build_type }}" | |
$env:COMPILER = "${{ matrix.compiler }}" | |
$env:GITHUB_ACTIONS = "true" | |
$env:TASK = "${{ matrix.task }}" | |
& "$env:GITHUB_WORKSPACE/.ci/test_windows.ps1" | |
test-r-sanitizers: | |
name: r-sanitizers (ubuntu-latest, R-devel, ${{ matrix.compiler }} ASAN/UBSAN) | |
timeout-minutes: 60 | |
runs-on: ubuntu-latest | |
container: wch1/r-debug | |
strategy: | |
fail-fast: false | |
matrix: | |
include: | |
- r_customization: san | |
compiler: gcc | |
- r_customization: csan | |
compiler: clang | |
steps: | |
- name: Trust git cloning LightGBM | |
run: | | |
git config --global --add safe.directory "${GITHUB_WORKSPACE}" | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 5 | |
submodules: true | |
- name: Install packages | |
shell: bash | |
run: | | |
RDscript${{ matrix.r_customization }} -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" | |
sh build-cran-package.sh --r-executable=RD${{ matrix.r_customization }} | |
RD${{ matrix.r_customization }} CMD INSTALL lightgbm_*.tar.gz || exit -1 | |
- name: Run tests with sanitizers | |
shell: bash | |
run: | | |
cd R-package/tests | |
exit_code=0 | |
RDscript${{ matrix.r_customization }} testthat.R >> tests.log 2>&1 || exit_code=-1 | |
cat ./tests.log | |
exit ${exit_code} | |
test-r-debian-clang: | |
name: r-package (debian, R-devel, clang) | |
timeout-minutes: 60 | |
runs-on: ubuntu-latest | |
container: rhub/debian-clang-devel | |
steps: | |
- name: Install Git before checkout | |
shell: bash | |
run: | | |
apt-get update --allow-releaseinfo-change | |
apt-get install --no-install-recommends -y git | |
- name: Trust git cloning LightGBM | |
run: | | |
git config --global --add safe.directory "${GITHUB_WORKSPACE}" | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 5 | |
submodules: true | |
- name: update to clang 15 | |
shell: bash | |
run: | | |
# remove clang stuff that comes installed in the image | |
apt-get autoremove -y --purge \ | |
clang-* \ | |
libclang-* \ | |
libunwind-* \ | |
llvm-* | |
# | |
# replace it all with clang-15 | |
apt-get update -y | |
apt-get install --no-install-recommends -y \ | |
gnupg \ | |
lsb-release \ | |
software-properties-common \ | |
wget | |
# | |
wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | apt-key add - | |
# | |
add-apt-repository "deb http://apt.llvm.org/unstable/ llvm-toolchain main" | |
apt-get install -y --no-install-recommends \ | |
clang-15 \ | |
clangd-15 \ | |
clang-format-15 \ | |
clang-tidy-15 \ | |
clang-tools-15 \ | |
lldb-15 \ | |
lld-15 \ | |
llvm-15-dev \ | |
llvm-15-tools \ | |
libomp-15-dev \ | |
libc++-15-dev \ | |
libc++abi-15-dev \ | |
libclang-common-15-dev \ | |
libclang-15-dev \ | |
libclang-cpp15-dev \ | |
libunwind-15-dev | |
# overwrite everything in /usr/bin with the new v15 versions | |
cp --remove-destination /usr/lib/llvm-15/bin/* /usr/bin/ | |
- name: Install packages and run tests | |
shell: bash | |
run: | | |
export PATH=/opt/R-devel/bin/:${PATH} | |
Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" | |
sh build-cran-package.sh | |
R CMD check --as-cran --run-donttest lightgbm_*.tar.gz || exit -1 | |
if grep -q -E "NOTE|WARNING|ERROR" lightgbm.Rcheck/00check.log; then | |
echo "NOTEs, WARNINGs, or ERRORs have been found by R CMD check" | |
exit -1 | |
fi | |
all-r-package-jobs-successful: | |
if: always() | |
runs-on: ubuntu-latest | |
needs: [test, test-r-sanitizers, test-r-debian-clang] | |
steps: | |
- name: Note that all tests succeeded | |
uses: re-actors/[email protected] | |
with: | |
jobs: ${{ toJSON(needs) }} |