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release 3.1.1 #3611

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Dec 8, 2020
Merged

release 3.1.1 #3611

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3229e82
release 3.1.1
jameslamb Nov 29, 2020
6f413b8
Merge branch 'master' into 3.1.1-release
jameslamb Dec 5, 2020
5b6b59c
Merge branch 'master' into 3.1.1-release
StrikerRUS Dec 7, 2020
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2 changes: 1 addition & 1 deletion .appveyor.yml
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version: 3.1.0.99.{build}
version: 3.1.1.{build}

image: Visual Studio 2015
platform: x64
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18 changes: 9 additions & 9 deletions R-package/configure
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#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for lightgbm 3.1.0.99.
# Generated by GNU Autoconf 2.69 for lightgbm 3.1.1.
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/gha run r-valgrind

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this will probably take 40-60 minutes: https://github.com/microsoft/LightGBM/actions/runs/402978050

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I'll use this comment thread for all R-related issues so this PR doesn't pick up too many comments and we can resolve it all at once.

good news: tests are passing on Solaris and on Windows 32-bit!
bad news: there is a NOTE from R CMD CHECK that I think was introduced by the work for #3390

  • checking R code for possible problems ... NOTE
    partial argument match of 'data' to 'dataset'
    lgb.cv : : warning in getinfo(data = data, name =
    "init_score"): partial argument match of 'data' to 'dataset'
    lgb.cv : : warning in getinfo(data = data, name = "weight"):

I'll open a separate PR to fix this and to make sure we catch it in CI. Should be quick.

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I can see this NOTE in recent builds in CI: https://github.com/microsoft/LightGBM/runs/1502651682

it wasn't caught because the "CRAN incoming note" is no longer thrown now that the package is on CRAN.

https://github.com/microsoft/LightGBM/runs/1502651682

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@jameslamb jameslamb Dec 5, 2020 •
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valgrind looks happy! This is the same output we had for 3.1.0 which was accepted by CRAN.

==2062== Memcheck, a memory error detector
==2062== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==2062== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info
==2062== Command: /usr/local/RDvalgrind/lib/R/bin/exec/R --no-readline --vanilla -f testthat.R
==2062== 
Loading required package: R6
==2062== Conditional jump or move depends on uninitialised value(s)
==2062==    at 0x49CF138: gregexpr_Regexc (grep.c:2439)
==2062==    by 0x49D1F13: do_regexpr (grep.c:3100)
==2062==    by 0x49A0058: bcEval (eval.c:7121)
==2062==    by 0x498B67F: Rf_eval (eval.c:727)
==2062==    by 0x498E414: R_execClosure (eval.c:1895)
==2062==    by 0x498E0C7: Rf_applyClosure (eval.c:1821)
==2062==    by 0x499FC8C: bcEval (eval.c:7089)
==2062==    by 0x498B67F: Rf_eval (eval.c:727)
==2062==    by 0x498B1CB: forcePromise (eval.c:555)
==2062==    by 0x49963AB: FORCE_PROMISE (eval.c:5142)
==2062==    by 0x4996566: getvar (eval.c:5183)
==2062==    by 0x499D1A5: bcEval (eval.c:6873)
==2062==  Uninitialised value was created by a stack allocation
==2062==    at 0x49CEC37: gregexpr_Regexc (grep.c:2369)
==2062== 
==2062== 
==2062== HEAP SUMMARY:
==2062==     in use at exit: 321,320,729 bytes in 55,930 blocks
==2062==   total heap usage: 2,659,604 allocs, 2,603,674 frees, 6,003,459,320 bytes allocated
==2062== 
==2062== 336 bytes in 1 blocks are possibly lost in loss record 152 of 2,701
==2062==    at 0x483DD99: calloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)
==2062==    by 0x40149CA: allocate_dtv (dl-tls.c:286)
==2062==    by 0x40149CA: _dl_allocate_tls (dl-tls.c:532)
==2062==    by 0x5702322: allocate_stack (allocatestack.c:622)
==2062==    by 0x5702322: pthread_create@@GLIBC_2.2.5 (pthread_create.c:660)
==2062==    by 0x56D0DDA: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==2062==    by 0x56C88E0: GOMP_parallel (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==2062==    by 0x1543D7C4: LGBM_DatasetCreateFromCSC (c_api.cpp:1286)
==2062==    by 0x1546BEAB: LGBM_DatasetCreateFromCSC_R (lightgbm_R.cpp:91)
==2062==    by 0x4941E2F: R_doDotCall (dotcode.c:634)
==2062==    by 0x494CCC6: do_dotcall (dotcode.c:1281)
==2062==    by 0x499FB01: bcEval (eval.c:7078)
==2062==    by 0x498B67F: Rf_eval (eval.c:727)
==2062==    by 0x498E414: R_execClosure (eval.c:1895)
==2062== 
==2062== LEAK SUMMARY:
==2062==    definitely lost: 0 bytes in 0 blocks
==2062==    indirectly lost: 0 bytes in 0 blocks
==2062==      possibly lost: 336 bytes in 1 blocks
==2062==    still reachable: 321,320,393 bytes in 55,929 blocks
==2062==                       of which reachable via heuristic:
==2062==                         newarray           : 4,264 bytes in 1 blocks
==2062==         suppressed: 0 bytes in 0 blocks
==2062== Reachable blocks (those to which a pointer was found) are not shown.
==2062== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==2062== 
==2062== For lists of detected and suppressed errors, rerun with: -s
==2062== ERROR SUMMARY: 7 errors from 2 contexts (suppressed: 0 from 0)

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@guolinke @StrikerRUS I think this release is ready! All the PRs we wanted to get in have been merged, and the extra CRAN checks for the R package are passing.

Should I submit to CRAN?

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/gha build r-artifacts

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https://github.com/microsoft/LightGBM/runs/1512517160?check_suite_focus=true

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produced this artifact: https://github.com/microsoft/LightGBM/suites/1623533888/artifacts/29854422

I'll wait to submit until @guolinke says it's ok

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Just submitted to CRAN!

#
#
# Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
Expand Down Expand Up @@ -576,8 +576,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='lightgbm'
PACKAGE_TARNAME='lightgbm'
PACKAGE_VERSION='3.1.0.99'
PACKAGE_STRING='lightgbm 3.1.0.99'
PACKAGE_VERSION='3.1.1'
PACKAGE_STRING='lightgbm 3.1.1'
PACKAGE_BUGREPORT=''
PACKAGE_URL=''

Expand Down Expand Up @@ -1182,7 +1182,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures lightgbm 3.1.0.99 to adapt to many kinds of systems.
\`configure' configures lightgbm 3.1.1 to adapt to many kinds of systems.

Usage: $0 [OPTION]... [VAR=VALUE]...

Expand Down Expand Up @@ -1244,7 +1244,7 @@ fi

if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of lightgbm 3.1.0.99:";;
short | recursive ) echo "Configuration of lightgbm 3.1.1:";;
esac
cat <<\_ACEOF

Expand Down Expand Up @@ -1311,7 +1311,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
lightgbm configure 3.1.0.99
lightgbm configure 3.1.1
generated by GNU Autoconf 2.69

Copyright (C) 2012 Free Software Foundation, Inc.
Expand All @@ -1328,7 +1328,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by lightgbm $as_me 3.1.0.99, which was
It was created by lightgbm $as_me 3.1.1, which was
generated by GNU Autoconf 2.69. Invocation command line was

$ $0 $@
Expand Down Expand Up @@ -2389,7 +2389,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by lightgbm $as_me 3.1.0.99, which was
This file was extended by lightgbm $as_me 3.1.1, which was
generated by GNU Autoconf 2.69. Invocation command line was

CONFIG_FILES = $CONFIG_FILES
Expand Down Expand Up @@ -2442,7 +2442,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
lightgbm config.status 3.1.0.99
lightgbm config.status 3.1.1
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

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14 changes: 14 additions & 0 deletions R-package/cran-comments.md
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# CRAN Submission History

## v3.1.1 - Submission 1 - (TBD)

### CRAN response

### Maintainer Notes

Submitted a fix to 3.1.0 that skips some learning-to-rank tests on 32-bit Windows.

## v3.1.0 - Submission 1 - (November 15, 2020)

### CRAN response

Accepted to CRAN, November 18.

On November 21, found out that the CRAN's `r-oldrel-windows-ix86+x86_64` check was failing, with an issue similar to the one faced on Solaris and fixed in https://github.com/microsoft/LightGBM/pull/3534.

CRAN did not ask for a re-submission, but this was fixed in 3.1.1.

### Maintainer Notes

This package was submitted with the following information in the "optional comments" box.
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2 changes: 1 addition & 1 deletion VERSION.txt
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3.1.0.99
3.1.1