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MIIC v2.0.1: Preparation of CRAN update submission, group all breaking changes. #133

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merged 37 commits into from
Sep 13, 2024

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franck-simon
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  • Inclusion of the changes considered for a very long time from the output branch
  • standardize the naming in function, parameters, returned values

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Merci Franck 😁

#' Please note that the order is important: in standard mode, "var1 var2" will
#' be interpreted as var1 -> var2 and in temporal mode, "var1 var2 3" is
#' interpreted as var1_lag3 -> var2_lag0. Please note also that, in temporal
#' mode, for contextual variables that are not lagged, the expected value in the
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(By definition, contextual variables are not lagged Therefore the expected value... (sorry, really tiny comment))

R/miic.R Outdated Show resolved Hide resolved
#' When consistency is activated, \emph{ori_consensus_ratio} is used as
#' threshold when deducing the type of an consensus edge tip (head/tail)
#' from the average probability of orientations over the cycle of graphs.
#' For a given edge tip, denote by p the average probability of it being a head,
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EN (OD)

R/miic.R Show resolved Hide resolved
@franck-simon franck-simon marked this pull request as ready for review August 28, 2024 12:32
@franck-simon franck-simon requested a review from O-mics August 28, 2024 16:00
@franck-simon franck-simon changed the title MIIC v2.0.1: Preparation of CRAN update submision, group all breaking changes. MIIC v2.0.1: Preparation of CRAN update submission, group all breaking changes. Aug 29, 2024
R/tmiic.plot.R Outdated Show resolved Hide resolved
@louise-rb-dupuis
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Great modifications and re-organization ! :)

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@louis-montagne louis-montagne left a comment

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Rien de particulier de mon côté, je trouve le code plus lisible sur certaines partie. Très bien pour le summary

@franck-simon franck-simon linked an issue Sep 12, 2024 that may be closed by this pull request
@franck-simon franck-simon merged commit 96c685f into master Sep 13, 2024
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Update documentation/comments in source code
4 participants